# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	7.71e-13		
1e0cA	271	1.55e-12	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	1.58e-12	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	1.83e-12		
1gmxA	108	1.97e-11	c.46.1.3	65355
1yt8A	539	2.46e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1uarA	285	6.98e-11	c.46.1.2,c.46.1.2	107762,107763
1qb0A	211	7.90e-11	c.46.1.1	32699
2fsxA	148	8.34e-11		
1c25	161	1.46e-10		
1ymkA	175	1.89e-10	c.46.1.1	123699
1t3kA	152	3.66e-10	c.46.1.1	106357
2a2kA	175	3.74e-10		
1whbA	157	4.44e-10	c.46.1.4	114639
1okgA	373	5.27e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	1.88e-09		
2j6pA	152	9.94e-09		
2gwfA	157	1.88e-08	c.46.1.4	135802
1wv9A	94	3.40e-08		
2oucA	142	9.05e-08		
1yn9A	169	5.328		
2f46A	156	8.020		
1yz4A	160	8.854		
2c5sA	413	10.21	c.26.2.6,d.308.1.1	129950,129951
2dbqA	334	10.61		
1x24A	180	14.69		
1zclA	180	16.01		
1ywfA	296	17.36	c.45.1.5	124144
1rxdA	159	22.07	c.45.1.1	111959
1vhrA	184	23.40	c.45.1.1	32651
1eudB	396	23.71	c.23.4.1,d.142.1.4	31150,41571
2p4gA	270	24.93		
2b4uA	335	25.36		
1ep3A	311	26.42	c.1.4.1	28597
1wrmA	165	26.62		
2cybA	323	28.15		
1i9sA	210	28.83	c.45.1.1	62099
2c3zA	222	29.49		
2c46A	241	30.06		
1vhoA	346	30.42	b.49.3.1,c.56.5.4	100694,100695
1npyA	271	30.86	c.2.1.7,c.58.1.5	85995,85996
2i6jA	161	32.90		
1y56A	493	35.57		
2p4dA	172	36.18		
2cftA	298	36.53		
1yloA	348	36.96	b.49.3.1,c.56.5.4	123659,123660
2r0bA	154	37.53		
1d5rA	324	41.75	b.7.1.1,c.45.1.1	23181,32697
2b4pA	334	43.63		
2hxpA	155	43.69		
2z0jA	237	48.36		
1tf5A	844	49.64	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	106834,106835,106836,106837
2imgA	151	49.91		
2fh7A	595	50.08		
1y0eA	223	53.24	c.1.2.5	116297
2bo1A	101	56.62		
1zzwA	149	60.96		
1igs	248	61.46		
1zckA	154	62.06		
2d13A	227	62.47	c.26.2.1	131121
1fc6A	388	64.97	b.36.1.3,c.14.1.2	64738,64739
1y0yA	353	65.06	b.49.3.1,c.56.5.4	122514,122515
2e18A	257	65.52		
1fpzA	212	65.63	c.45.1.1	59976
1sur	215	66.52		
2a9fA	398	67.07		
2pt7A	330	70.47		
2nu8B	388	71.66		
2j16A	182	72.17		
2fshA	853	72.22		
1oheA	348	73.50	c.45.1.1,c.45.1.1	87013,87014
1xfoA	357	75.15	b.49.3.1,c.56.5.4	115265,115266
1f8fA	371	77.75	b.35.1.2,c.2.1.1	83246,83247
1i2cA	404	77.93	c.2.1.2	83666
5nulA	138	78.95	c.23.5.1	31191
1e5xA	486	82.39	c.79.1.1	59283
1i0dA	332	83.45	c.1.9.3	61487
1psdA	409	85.75	c.2.1.4,c.23.12.1,d.58.18.1	30097,31357,39354
1p15A	253	87.46	c.45.1.2	93894