# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e0cA 271 1.30e-14 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 1.38e-14 1rhsA 296 1.50e-14 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 2.44e-14 1yt8A 539 3.36e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 7.90e-13 c.46.1.3 65355 1uarA 285 2.82e-12 c.46.1.2,c.46.1.2 107762,107763 1okgA 373 2.91e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1qb0A 211 3.45e-12 c.46.1.1 32699 2fsxA 148 4.49e-12 1c25 161 7.84e-12 1ymkA 175 1.63e-11 c.46.1.1 123699 1t3kA 152 1.90e-11 c.46.1.1 106357 2a2kA 175 2.36e-11 2eg4A 230 2.46e-11 1whbA 157 4.07e-11 c.46.1.4 114639 2j6pA 152 4.47e-10 2gwfA 157 1.17e-09 c.46.1.4 135802 1wv9A 94 3.27e-09 2oucA 142 1.05e-08 1yn9A 169 3.825 2c5sA 413 4.769 c.26.2.6,d.308.1.1 129950,129951 2f46A 156 5.496 1yz4A 160 6.198 1oywA 523 6.457 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2c3zA 222 7.297 1x24A 180 12.21 2i6jA 161 13.99 1vhrA 184 14.14 c.45.1.1 32651 1zclA 180 14.30 2hxpA 155 16.16 1wrmA 165 16.72 1ywfA 296 17.18 c.45.1.5 124144 2r0bA 154 18.98 1eudB 396 20.29 c.23.4.1,d.142.1.4 31150,41571 1y0eA 223 20.75 c.1.2.5 116297 1rxdA 159 25.45 c.45.1.1 111959 1igs 248 25.67 2p4dA 172 27.20 2p4gA 270 27.31 1tf5A 844 27.62 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2b4uA 335 27.76 3b5vA 248 28.52 2cftA 298 29.21 1npyA 271 32.09 c.2.1.7,c.58.1.5 85995,85996 2c46A 241 32.27 1vl2A 421 32.72 c.26.2.1,d.210.1.1 108708,108709 2q1sA 377 32.99 2jg2A 422 33.32 2dekA 265 33.60 c.90.1.1 131430 1i9gA 280 34.04 c.66.1.13 62090 1t5iA 172 34.26 c.37.1.19 106450 1or8A 340 35.40 c.66.1.6 93451 2a9fA 398 37.18 1i9sA 210 37.30 c.45.1.1 62099 1ep3A 311 39.89 c.1.4.1 28597 2nu8B 388 40.02 2cybA 323 40.97 1yloA 348 42.44 b.49.3.1,c.56.5.4 123659,123660 1ct9A 553 43.99 c.26.2.1,d.153.1.1 31616,41834 2e0tA 151 44.51 2d13A 227 47.26 c.26.2.1 131121 2f2sA 406 47.50 2b69A 343 48.28 c.2.1.2 127974 1ufyA 122 50.36 d.79.1.2 88489 1qorA 327 51.12 b.35.1.2,c.2.1.1 24766,29782 2pt7A 330 51.32 1k92A 455 52.46 c.26.2.1,d.210.1.1 68325,68326 2f4dA 184 52.68 2j16A 182 52.81 1zzwA 149 53.56 1sur 215 54.07 1a53 247 54.38 1jlnA 297 54.46 c.45.1.2 63172 2nt2A 145 55.34 2imgA 151 55.44 2e18A 257 55.61 1y56A 493 55.63 2bo1A 101 56.19 1oheA 348 56.25 c.45.1.1,c.45.1.1 87013,87014 2b4pA 334 57.28 1i2cA 404 59.57 c.2.1.2 83666 3cwvA 369 61.12 1sqgA 429 61.87 a.79.1.3,c.66.1.38 105912,105913 5nulA 138 64.58 c.23.5.1 31191 2d2jA 329 65.97 c.1.9.3 131175 1qo2A 241 67.40 c.1.2.1 28533 1p15A 253 68.33 c.45.1.2 93894 1d5rA 324 69.27 b.7.1.1,c.45.1.1 23181,32697 2c5aA 379 71.10 c.2.1.2 129894 1gc5A 467 71.14 c.72.1.3 60429 2fh7A 595 73.43 2yxeA 215 73.52 1p0kA 349 74.93 c.1.4.1 87648 1z45A 699 76.77 b.30.5.4,c.2.1.2 124427,124428 1zckA 154 78.68 2b4gA 317 79.11 c.1.4.1 127829 1gpjA 404 80.24 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1dorA 311 80.71 c.1.4.1 28595 2citA 282 82.78 c.1.8.3 130499 1i0dA 332 83.78 c.1.9.3 61487 2esbA 188 86.12 1r26A 125 86.63 c.47.1.1 96847