# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e0cA 271 1.97e-16 c.46.1.2,c.46.1.2 32717,32718 1rhs 296 2.96e-16 2hhgA 139 2.97e-16 1rhsA 296 4.60e-16 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 5.59e-15 c.46.1.3 65355 1yt8A 539 7.33e-15 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 2.81e-14 c.46.1.2,c.46.1.2 107762,107763 2fsxA 148 8.29e-14 1qb0A 211 8.67e-14 c.46.1.1 32699 1c25 161 1.30e-13 1okgA 373 1.37e-13 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1ymkA 175 2.18e-13 c.46.1.1 123699 1t3kA 152 3.21e-13 c.46.1.1 106357 2eg4A 230 7.20e-13 2a2kA 175 1.23e-12 1whbA 157 3.28e-12 c.46.1.4 114639 2j6pA 152 2.17e-11 2gwfA 157 1.05e-10 c.46.1.4 135802 1wv9A 94 2.96e-10 2oucA 142 5.96e-10 2c3zA 222 1.553 1pjr 724 2.098 1yz4A 160 3.336 1yn9A 169 3.476 2f46A 156 3.627 3b5vA 248 6.257 2p4dA 172 6.530 1vhrA 184 7.353 c.45.1.1 32651 1ct9A 553 8.038 c.26.2.1,d.153.1.1 31616,41834 1pjrA 724 8.417 c.37.1.19,c.37.1.19 32391,32392 1ox0A 430 9.544 c.95.1.1,c.95.1.1 87495,87496 1e5xA 486 9.828 c.79.1.1 59283 1ywfA 296 10.38 c.45.1.5 124144 1zejA 293 10.45 1ep3A 311 11.39 c.1.4.1 28597 1y56A 493 11.87 2r0bA 154 12.00 1x24A 180 12.12 1p15A 253 12.35 c.45.1.2 93894 2aouA 292 13.63 c.66.1.19 127100 2p4gA 270 13.89 1qorA 327 13.98 b.35.1.2,c.2.1.1 24766,29782 2i6jA 161 14.18 2c46A 241 14.80 1a53 247 14.89 2hxpA 155 16.22 1t5iA 172 18.36 c.37.1.19 106450 1rxdA 159 18.46 c.45.1.1 111959 1pc3A 350 18.86 c.94.1.1 104102 2fh7A 595 19.73 1u08A 386 20.45 c.67.1.1 107543 2gupA 292 20.66 c.55.1.10,c.55.1.10 135744,135745 1wrmA 165 20.89 2hhjA 267 20.97 c.60.1.1 136497 2pt7A 330 21.02 1gc5A 467 21.55 c.72.1.3 60429 1igs 248 21.93 1xkqA 280 21.96 c.2.1.2 115417 1vr0A 247 22.18 c.148.1.1 120428 1d5rA 324 22.78 b.7.1.1,c.45.1.1 23181,32697 1dorA 311 24.38 c.1.4.1 28595 1psdA 409 24.79 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1jvbA 347 25.94 b.35.1.2,c.2.1.1 77181,77182 2d2jA 329 27.14 c.1.9.3 131175 1wlyA 333 28.22 1oywA 523 28.67 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2qb7A 397 29.79 2as0A 396 30.66 b.122.1.9,c.66.1.51 127227,127228 1i9gA 280 30.80 c.66.1.13 62090 2bv9A 290 30.98 c.1.8.3 129242 2c5sA 413 31.66 c.26.2.6,d.308.1.1 129950,129951 1i9sA 210 32.23 c.45.1.1 62099 2e0tA 151 32.49 1a53A 247 32.61 c.1.2.4 28564 2eihA 343 32.83 2f2sA 406 34.70 1fo3A 460 34.99 a.102.2.1 18845 2d13A 227 35.00 c.26.2.1 131121 1gpjA 404 35.07 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2b0mA 393 35.66 c.1.4.1 127644 1idk 359 36.34 1y0eA 223 37.55 c.1.2.5 116297 1i60A 278 38.19 c.1.15.4 71118 1bifA 469 38.90 c.37.1.7,c.60.1.4 31961,34003 2b69A 343 39.91 c.2.1.2 127974 2hrzA 342 40.72 1aj2 282 40.97 2hpkA 208 41.20 1rxwA 336 41.86 a.60.7.1,c.120.1.2 98059,98060 2j16A 182 42.12 2f4dA 184 42.79 1ufyA 122 43.13 d.79.1.2 88489 1tf5A 844 46.39 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1y0yA 353 46.69 b.49.3.1,c.56.5.4 122514,122515 1l3iA 192 47.84 c.66.1.22 77676 2v3gA 283 48.59 2rjoA 332 48.69 2v3aA 384 48.80 1rroA 108 48.85 a.39.1.4 17195 2nu8B 388 49.21 1npyA 271 49.45 c.2.1.7,c.58.1.5 85995,85996 1h5yA 253 54.04 c.1.2.1 65638 1bx4A 345 54.19 c.72.1.1 34935 1o54A 277 54.69 c.66.1.13 92482 1zclA 180 54.83 3ck6A 252 55.05 1u24A 337 57.79 c.45.1.4 112968 2imgA 151 57.84 1im8A 244 57.86 c.66.1.14 66212 2ipxA 233 58.46 1zzwA 149 59.03 2bo1A 101 59.75 1kl7A 514 59.98 c.79.1.1 72678 1sur 215 60.53 1wdpA 495 60.56 c.1.8.1 120907 1jnyA 435 60.84 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1vh7A 265 61.17 c.1.2.1 100646 1sc3A 178 61.25 c.17.1.1 105416 1qi9A 556 61.52 a.111.1.2 19053 1x6vA 630 62.04 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2dt9A 167 62.89 1idkA 359 62.93 b.80.1.2 28025 2fshA 853 63.63 2hmaA 376 63.83 2hpvA 208 64.37 2nxcA 254 64.89 c.66.1.39 138739 2dbqA 334 65.06 1v7cA 351 65.06 c.79.1.1 100446 1su8A 636 65.20 e.26.1.2 98999 1ozhA 566 65.26 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1mrgA 263 67.29 d.165.1.1 42183 1pvdA 537 67.71 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1bif 469 67.83 1zckA 154 68.10 2q3zA 687 69.07 1vi2A 300 69.59 c.2.1.7,c.58.1.5 100726,100727 1kcmA 270 70.59 d.129.3.4 72300 1p77A 272 71.16 c.2.1.7,c.58.1.5 94214,94215 2nt2A 145 72.41 1pzgA 331 73.86 c.2.1.5,d.162.1.1 95425,95426 2pceA 386 74.53 1yb5A 351 75.11 b.35.1.2,c.2.1.1 116601,116602 1wwkA 307 77.42 2eh6A 375 77.94 2yxeA 215 77.94 2cfmA 561 78.23 1a8y 367 78.62 1fc6A 388 78.79 b.36.1.3,c.14.1.2 64738,64739 1va0A 239 79.17 c.90.1.1 119899 3c24A 286 80.91 1fgxA 288 81.17 c.68.1.2 34508 1jf9A 408 81.71 c.67.1.3 62931 2vooA 193 82.21 2qneA 495 82.64 2ib8A 395 83.67 2pgd 482 83.92 2agkA 260 83.97 2hjhA 354 85.22 1pg4A 652 87.27 e.23.1.1 88067 1tzjA 338 89.10 c.79.1.1 112868 5nulA 138 89.74 c.23.5.1 31191