# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 1.38e-14 1e0cA 271 1.72e-14 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 1.87e-14 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 3.68e-14 1gmxA 108 6.05e-13 c.46.1.3 65355 1yt8A 539 6.29e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1qb0A 211 2.16e-12 c.46.1.1 32699 1uarA 285 3.58e-12 c.46.1.2,c.46.1.2 107762,107763 2fsxA 148 3.89e-12 1c25 161 7.49e-12 1okgA 373 8.68e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1ymkA 175 1.57e-11 c.46.1.1 123699 1t3kA 152 1.57e-11 c.46.1.1 106357 2a2kA 175 1.89e-11 1whbA 157 4.39e-11 c.46.1.4 114639 2eg4A 230 4.75e-11 2j6pA 152 3.18e-10 2gwfA 157 1.66e-09 c.46.1.4 135802 2oucA 142 1.80e-09 1wv9A 94 2.50e-09 1yn9A 169 2.385 1x24A 180 4.612 2f46A 156 4.855 1zclA 180 6.045 2c3zA 222 7.088 1yz4A 160 7.229 2c5sA 413 7.776 c.26.2.6,d.308.1.1 129950,129951 1ywfA 296 11.53 c.45.1.5 124144 1i9sA 210 14.79 c.45.1.1 62099 2dbqA 334 16.26 2i6jA 161 16.40 2imgA 151 17.37 2r0bA 154 17.47 1vhoA 346 18.30 b.49.3.1,c.56.5.4 100694,100695 2c46A 241 19.33 2cybA 323 20.06 1vhrA 184 23.03 c.45.1.1 32651 1wrmA 165 23.90 1rxdA 159 23.93 c.45.1.1 111959 2b4uA 335 24.07 1eudB 396 24.22 c.23.4.1,d.142.1.4 31150,41571 1tf5A 844 24.41 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1igs 248 26.13 2nt2A 145 27.16 1y0eA 223 29.47 c.1.2.5 116297 1yloA 348 31.10 b.49.3.1,c.56.5.4 123659,123660 2p4dA 172 33.33 2fh7A 595 35.23 3b5vA 248 35.69 2dekA 265 35.90 c.90.1.1 131430 2b4pA 334 36.64 2hxpA 155 37.78 2cftA 298 40.90 2j16A 182 41.48 1xfoA 357 41.71 b.49.3.1,c.56.5.4 115265,115266 1i9gA 280 41.73 c.66.1.13 62090 1oheA 348 44.31 c.45.1.1,c.45.1.1 87013,87014 2e18A 257 44.45 2fshA 853 46.55 1zzwA 149 48.78 1t5iA 172 52.47 c.37.1.19 106450 1p15A 253 52.56 c.45.1.2 93894 1ep3A 311 52.68 c.1.4.1 28597 2f4dA 184 52.73 2nu8B 388 52.86 1npyA 271 54.24 c.2.1.7,c.58.1.5 85995,85996 3cwvA 369 54.44 1fpzA 212 54.49 c.45.1.1 59976 2esbA 188 54.56 2q1sA 377 55.22 1r3sA 367 57.41 c.1.22.1 96963 2df8A 325 57.48 1sur 215 61.61 2bo1A 101 62.40 2e0tA 151 67.32 2a9fA 398 67.64 1zckA 154 68.06 1a53 247 68.56 1y0yA 353 70.47 b.49.3.1,c.56.5.4 122514,122515 1jlnA 297 71.62 c.45.1.2 63172 2p4gA 270 74.97 2pt7A 330 75.43 1or8A 340 76.97 c.66.1.6 93451 1vl2A 421 77.00 c.26.2.1,d.210.1.1 108708,108709 1bif 469 77.64 2hhjA 267 78.22 c.60.1.1 136497 2eo5A 419 78.26 2p0lA 288 78.56 2f2sA 406 79.11 2z0jA 237 80.46 1oywA 523 81.97 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2hcmA 164 83.45 1y56A 493 83.81 1dorA 311 84.29 c.1.4.1 28595 2jg2A 422 84.83 2e5fA 325 84.99 2b69A 343 87.06 c.2.1.2 127974 1f8fA 371 89.68 b.35.1.2,c.2.1.1 83246,83247