# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhsA	296	1.42e-10	c.46.1.2,c.46.1.2	32703,32704
2hhgA	139	1.52e-10		
1e0cA	271	2.79e-10	c.46.1.2,c.46.1.2	32717,32718
1rhs	296	3.06e-10		
1uarA	285	1.64e-09	c.46.1.2,c.46.1.2	107762,107763
1gmxA	108	3.22e-09	c.46.1.3	65355
1yt8A	539	3.84e-09	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1qb0A	211	5.16e-09	c.46.1.1	32699
1whbA	157	7.98e-09	c.46.1.4	114639
2fsxA	148	9.20e-09		
1c25	161	1.08e-08		
1ymkA	175	1.10e-08	c.46.1.1	123699
2a2kA	175	1.65e-08		
1t3kA	152	1.90e-08	c.46.1.1	106357
1okgA	373	2.09e-08	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	4.46e-08		
2j6pA	152	7.64e-08		
2gwfA	157	3.53e-07	c.46.1.4	135802
2oucA	142	5.67e-07		
1wv9A	94	8.72e-07		
1yn9A	169	5.033		
2dbqA	334	11.88		
2f46A	156	12.17		
1vhrA	184	14.26	c.45.1.1	32651
1zclA	180	17.11		
1yz4A	160	18.18		
1d5rA	324	19.35	b.7.1.1,c.45.1.1	23181,32697
1fpzA	212	21.40	c.45.1.1	59976
1psdA	409	29.35	c.2.1.4,c.23.12.1,d.58.18.1	30097,31357,39354
1oheA	348	31.57	c.45.1.1,c.45.1.1	87013,87014
1ywfA	296	32.72	c.45.1.5	124144
2p4dA	172	33.46		
1wrmA	165	34.67		
2b4uA	335	36.40		
1x24A	180	36.56		
2dekA	265	36.59	c.90.1.1	131430
2c3zA	222	37.21		
1vhoA	346	41.70	b.49.3.1,c.56.5.4	100694,100695
2fh7A	595	42.61		
1jlnA	297	47.40	c.45.1.2	63172
1zzwA	149	47.95		
2imgA	151	50.27		
2b4gA	317	51.87	c.1.4.1	127829
2b4pA	334	52.72		
2e18A	257	52.79		
2esbA	188	56.87		
2i6jA	161	58.61		
1i9sA	210	60.15	c.45.1.1	62099
2r0bA	154	61.40		
1sur	215	62.29		
2q1sA	377	65.20		
2jg2A	422	67.04		
1larA	575	69.94	c.45.1.2,c.45.1.2	32693,32694
1ir6A	424	70.53	c.107.1.2	71342
2nt2A	145	71.36		
3b2yA	275	71.91		
1rxdA	159	74.09	c.45.1.1	111959
1v7zA	260	80.21	c.125.1.1	100488
2cftA	298	80.33		
2c46A	241	82.25		
2j16A	182	83.88		
2f4dA	184	84.83		
2gv8A	447	86.04	c.3.1.5,c.3.1.5	135759,135760
2c5aA	379	88.58	c.2.1.2	129894
1ytw	306	88.71