Best Alignments for T0411

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1gmxA	2.6154e-15	1gmxA/T0411-1gmxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.3
2eg4A	4.2931e-15	2eg4A/T0411-2eg4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rhsA	1.0186e-14	1rhsA/T0411-1rhsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1t3kA	1.6809e-14	1t3kA/T0411-1t3kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
2fsxA	2.2456e-14	2fsxA/T0411-2fsxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hhgA	2.5373e-14	2hhgA/T0411-2hhgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yt8A	4.2674e-14	1yt8A/T0411-1yt8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
1e0cA	1.5548e-13	1e0cA/T0411-1e0cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1ymkA	3.0695e-13	1ymkA/T0411-1ymkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
1rhs	9.7696e-13	1rhs/T0411-1rhs-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qb0A	2.1979e-12	1qb0A/T0411-1qb0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
1c25	2.3220e-12	1c25/T0411-1c25-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a2kA	2.7424e-12	2a2kA/T0411-2a2kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1uarA	3.1297e-12	1uarA/T0411-1uarA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1wv9A	5.3151e-12	1wv9A/T0411-1wv9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1okgA	7.1025e-10	1okgA/T0411-1okgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2 d.26.1.3
2oucA	7.3484e-09	2oucA/T0411-2oucA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1hzmA	3.2785e-08	1hzmA/T0411-1hzmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.1
2j6pA	5.3024e-07	2j6pA/T0411-2j6pA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gwfA	5.6483e-05	2gwfA/T0411-2gwfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.4

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001