# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 1.94e-13 1e0cA 271 9.55e-13 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 1.41e-12 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 2.97e-12 c.46.1.3 65355 1rhs 296 4.24e-12 1yt8A 539 6.90e-12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1t3kA 152 1.15e-11 c.46.1.1 106357 2fsxA 148 1.43e-11 2eg4A 230 1.62e-11 1uarA 285 2.94e-11 c.46.1.2,c.46.1.2 107762,107763 1c25 161 6.92e-11 1qb0A 211 1.00e-10 c.46.1.1 32699 2a2kA 175 3.03e-10 1ymkA 175 3.67e-10 c.46.1.1 123699 1okgA 373 1.83e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 4.29e-09 1hzmA 154 1.48e-06 c.46.1.1 65975 2oucA 142 2.11e-06 2j6pA 152 1.68e-05 2gwfA 157 0.001808 c.46.1.4 135802 1whbA 157 0.6791 c.46.1.4 114639 1oywA 523 0.9713 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x24A 180 1.741 1jztA 246 2.179 c.104.1.1 63319 1zckA 154 2.645 1rxdA 159 3.483 c.45.1.1 111959 1tf5A 844 3.556 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2c5sA 413 6.678 c.26.2.6,d.308.1.1 129950,129951 2b4pA 334 6.681 2f46A 156 6.800 2scuA 288 7.276 c.2.1.8,c.23.4.1 30303,31131 1fukA 165 7.933 c.37.1.19 32409 2e0tA 151 8.422 1npyA 271 8.715 c.2.1.7,c.58.1.5 85995,85996 2hmaA 376 8.905 1wrmA 165 9.407 1yz4A 160 9.845 2i4iA 417 9.98 1yzhA 214 10.27 c.66.1.53 124277 2b4uA 335 10.41 1zzwA 149 10.69 2c46A 241 11.04 1ywfA 296 11.06 c.45.1.5 124144 2f4dA 184 11.10 2o8nA 265 11.22 1vl2A 421 11.70 c.26.2.1,d.210.1.1 108708,108709 2hcrA 326 12.74 1bykA 255 12.76 c.93.1.1 35706 2hcmA 164 14.02 2v1xA 591 15.70 1i24A 404 16.97 c.2.1.2 83663 1hv8A 367 17.18 c.37.1.19,c.37.1.19 32405,32406 2i6jA 161 17.28 3ca8A 266 17.42 2hxpA 155 18.27 1i2cA 404 18.35 c.2.1.2 83666 1gpmA 525 18.48 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1vhrA 184 19.32 c.45.1.1 32651 1zclA 180 19.66 1d5rA 324 22.64 b.7.1.1,c.45.1.1 23181,32697 2cftA 298 23.87 2q1sA 377 24.51 1nxzA 246 25.23 b.122.1.2,c.116.1.5 86391,86392 1eyzA 392 25.64 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2nloA 302 26.41 1ru8A 232 26.66 c.26.2.1 97849 2j16A 182 26.95 2fcaA 213 28.40 c.66.1.53 133262 2dm6A 333 28.63 b.35.1.2,c.2.1.1 131567,131568 1y1pA 342 29.49 c.2.1.2 122550 1yksA 440 30.99 c.37.1.14,c.37.1.14 123561,123562 1gph1 465 31.31 2nt2A 145 31.44 2yxeA 215 32.47 1sb8A 352 34.13 c.2.1.2 105410 2yzkA 178 34.74 1yb5A 351 35.06 b.35.1.2,c.2.1.1 116601,116602 2esbA 188 35.26 1hwxA 501 36.51 c.2.1.7,c.58.1.1 30250,33898 2imgA 151 36.67 1vjrA 271 37.02 c.108.1.14 100832 1i9sA 210 37.60 c.45.1.1 62099 2yxbA 161 37.85 1ez1A 392 38.21 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 2db3A 434 38.86 1t5iA 172 39.54 c.37.1.19 106450 1x6vA 630 40.05 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1scuA 288 40.35 c.2.1.8,c.23.4.1 30307,31135 2p4dA 172 41.84 1vhyA 257 42.65 b.122.1.2,c.116.1.5 100714,100715 1ao0A 459 44.98 c.61.1.1,d.153.1.1 34049,41816 1dkuA 317 45.26 c.61.1.2,c.61.1.2 34118,34119 1npdA 288 45.35 c.2.1.7,c.58.1.5 80681,80682 1rkxA 357 47.19 c.2.1.2 97631 2hoqA 241 47.35 1yn9A 169 47.67 1u7pA 164 48.38 c.108.1.17 113095 1fdr 248 48.74 2va8A 715 48.94 2aeeA 211 49.38 c.61.1.1 126620 2hjvA 163 49.89 2d5cA 263 51.96 2oycA 306 52.91 1eo1A 124 53.81 c.55.5.1 33739 2eggA 297 53.86 2bmfA 451 54.16 c.37.1.14,c.37.1.14 128791,128792 1ym3A 215 54.97 2jbhA 225 55.45 1n7hA 381 55.68 c.2.1.2 80250 1o5oA 221 55.84 c.61.1.1 92509 1jsxA 207 57.48 c.66.1.20 71846 2p4hX 322 58.08 1fsgA 233 58.49 c.61.1.1 34029 2vq3A 215 59.04 1bvyF 191 59.32 c.23.5.1 31207 1swvA 267 59.76 c.108.1.3 112134 2c5aA 379 60.62 c.2.1.2 129894 2z1mA 345 60.91 1dbrA 231 65.93 c.61.1.1 34041 1d7uA 433 66.18 c.67.1.4 34439 2r6jA 318 67.13 1kjqA 391 69.55 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2dy0A 190 70.59 2h4vA 320 70.76 1xgkA 352 71.84 c.2.1.2 115286 1vi2A 300 72.20 c.2.1.7,c.58.1.5 100726,100727 1nriA 306 73.13 c.80.1.3 86123 2hi0A 240 73.53 2pfuA 99 74.54 1bncA 449 75.14 b.84.2.1,c.30.1.1,d.142.1.2 28236,31643,41488 1m6nA 802 75.72 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 2hk9A 275 76.20 1fezA 256 78.03 c.108.1.3 43343 2i1yA 301 78.21 2j4jA 226 79.16 1hgxA 183 79.92 c.61.1.1 34027 1oheA 348 79.98 c.45.1.1,c.45.1.1 87013,87014 1orrA 347 82.29 c.2.1.2 93460 3b5vA 248 82.85 1wd5A 208 83.56 c.61.1.1 114524 1vkrA 125 84.54 c.44.2.1 108689 2dplA 308 85.01 1oi7A 288 86.04 c.2.1.8,c.23.4.1 87049,87050 1heiA 451 86.39 c.37.1.14,c.37.1.14 32463,32464 1fpzA 212 86.61 c.45.1.1 59976 2oc3A 303 87.00 1ryiA 382 87.05 c.3.1.2,d.16.1.3 118813,118814 2hdoA 209 87.12 c.108.1.6 136345 1w23A 360 88.60 c.67.1.4 114088 2iw0A 254 89.78 c.6.2.3 137737