# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 4.11e-12 1e0cA 271 1.40e-11 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 2.71e-11 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 6.43e-11 c.46.1.3 65355 1rhs 296 7.01e-11 1yt8A 539 1.05e-10 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2fsxA 148 1.72e-10 1uarA 285 2.00e-10 c.46.1.2,c.46.1.2 107762,107763 2eg4A 230 2.42e-10 1t3kA 152 2.81e-10 c.46.1.1 106357 1qb0A 211 1.13e-09 c.46.1.1 32699 1c25 161 1.44e-09 2a2kA 175 3.20e-09 1ymkA 175 3.42e-09 c.46.1.1 123699 1okgA 373 1.79e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 2.69e-08 1hzmA 154 6.30e-06 c.46.1.1 65975 2oucA 142 9.75e-06 2j6pA 152 5.39e-05 2gwfA 157 0.006125 c.46.1.4 135802 1whbA 157 1.580 c.46.1.4 114639 1oywA 523 2.182 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x24A 180 3.312 1jztA 246 4.477 c.104.1.1 63319 1zckA 154 5.219 1tf5A 844 5.414 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1rxdA 159 5.521 c.45.1.1 111959 2hmaA 376 8.505 1wrmA 165 8.647 1yzhA 214 9.089 c.66.1.53 124277 2i4iA 417 9.416 2hxpA 155 9.834 1zzwA 149 9.859 2v1xA 591 9.868 2b4pA 334 10.00 2scuA 288 10.15 c.2.1.8,c.23.4.1 30303,31131 2c5sA 413 11.28 c.26.2.6,d.308.1.1 129950,129951 1yz4A 160 11.51 1ywfA 296 11.54 c.45.1.5 124144 2b4uA 335 12.25 1fukA 165 12.94 c.37.1.19 32409 2c46A 241 13.39 2hcrA 326 14.29 2f4dA 184 15.08 2hcmA 164 15.33 2j16A 182 15.65 2o8nA 265 15.73 1vl2A 421 15.81 c.26.2.1,d.210.1.1 108708,108709 1npyA 271 16.47 c.2.1.7,c.58.1.5 85995,85996 1i2cA 404 16.58 c.2.1.2 83666 2f46A 156 16.73 1i24A 404 16.76 c.2.1.2 83663 2q1sA 377 17.24 1ru8A 232 17.53 c.26.2.1 97849 2e0tA 151 18.16 1hv8A 367 19.06 c.37.1.19,c.37.1.19 32405,32406 1vhrA 184 20.06 c.45.1.1 32651 1zclA 180 20.35 2esbA 188 21.25 2nt2A 145 22.37 2yxbA 161 22.70 2dm6A 333 23.79 b.35.1.2,c.2.1.1 131567,131568 1i9sA 210 25.21 c.45.1.1 62099 2p4dA 172 25.60 2imgA 151 26.10 1yb5A 351 26.42 b.35.1.2,c.2.1.1 116601,116602 1d5rA 324 27.73 b.7.1.1,c.45.1.1 23181,32697 1bykA 255 30.00 c.93.1.1 35706 1gpmA 525 30.19 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1eyzA 392 31.97 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2i6jA 161 32.08 2eggA 297 32.89 2h4vA 320 34.40 1jvbA 347 34.61 b.35.1.2,c.2.1.1 77181,77182 2j3hA 345 36.47 3ca8A 266 37.28 1gph1 465 37.57 1dkuA 317 37.86 c.61.1.2,c.61.1.2 34118,34119 2yzkA 178 37.91 2db3A 434 38.72 2cftA 298 39.24 1y1pA 342 41.98 c.2.1.2 122550 2fcaA 213 42.20 c.66.1.53 133262 1sb8A 352 42.87 c.2.1.2 105410 2hoqA 241 43.51 1yn9A 169 43.83 2yxeA 215 43.93 1ez1A 392 44.22 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1dbrA 231 48.91 c.61.1.1 34041 1eo1A 124 49.89 c.55.5.1 33739 2jbhA 225 50.61 1rkxA 357 50.70 c.2.1.2 97631 2c0cA 362 53.65 1ao0A 459 54.03 c.61.1.1,d.153.1.1 34049,41816 1scuA 288 56.12 c.2.1.8,c.23.4.1 30307,31135 2i1yA 301 56.25 1hwxA 501 56.60 c.2.1.7,c.58.1.1 30250,33898 1npdA 288 56.66 c.2.1.7,c.58.1.5 80681,80682 2va8A 715 57.46 2p4hX 322 57.56 1u7pA 164 58.52 c.108.1.17 113095 1nxzA 246 58.89 b.122.1.2,c.116.1.5 86391,86392 1w96A 554 61.14 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 2nloA 302 61.75 1wd5A 208 61.84 c.61.1.1 114524 2oc3A 303 63.37 1oheA 348 63.69 c.45.1.1,c.45.1.1 87013,87014 1x6vA 630 63.79 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1t5iA 172 64.50 c.37.1.19 106450 2hjvA 163 64.54 2d5cA 263 64.74 1n7hA 381 65.32 c.2.1.2 80250 5nul 138 65.80 1bvyF 191 66.22 c.23.5.1 31207 1swvA 267 67.90 c.108.1.3 112134 1fpzA 212 68.21 c.45.1.1 59976 1a3cA 181 68.22 c.61.1.1 34095 1rdfA 267 68.50 c.108.1.3 104884 2hi0A 240 69.01 1hgxA 183 69.35 c.61.1.1 34027 1jsxA 207 70.03 c.66.1.20 71846 2pzmA 330 71.47 1fdr 248 71.76 1j7jA 178 72.43 c.61.1.1 84131 1fezA 256 72.81 c.108.1.3 43343 2yv1A 294 73.71 2yvlA 248 73.85 2hcyA 347 74.06 2vq3A 215 74.25 1igs 248 74.92 1oi7A 288 76.92 c.2.1.8,c.23.4.1 87049,87050 1ym3A 215 77.10 1tvmA 113 77.56 2dy0A 190 78.38 1ptvA 321 78.72 c.45.1.2 32665 2r6jA 318 80.80 1rpmA 278 82.89 c.45.1.2 32679 2yrxA 451 84.13 1vi2A 300 84.43 c.2.1.7,c.58.1.5 100726,100727 1d7uA 433 84.58 c.67.1.4 34439 1xgkA 352 87.51 c.2.1.2 115286 1vkrA 125 87.70 c.44.2.1 108689 2bijA 305 88.98