# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 3.43e-15 1rhsA 296 2.43e-14 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 2.88e-14 c.46.1.2,c.46.1.2 32717,32718 1rhs 296 6.21e-14 1gmxA 108 6.87e-14 c.46.1.3 65355 1yt8A 539 1.61e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2eg4A 230 2.73e-13 1uarA 285 7.08e-13 c.46.1.2,c.46.1.2 107762,107763 2fsxA 148 1.38e-12 1t3kA 152 2.33e-12 c.46.1.1 106357 1c25 161 5.13e-12 1qb0A 211 1.05e-11 c.46.1.1 32699 2a2kA 175 3.15e-11 1ymkA 175 5.08e-11 c.46.1.1 123699 1wv9A 94 1.17e-10 1okgA 373 1.34e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 5.33e-07 1hzmA 154 1.15e-06 c.46.1.1 65975 2j6pA 152 1.02e-05 2gwfA 157 0.001398 c.46.1.4 135802 1whbA 157 0.1106 c.46.1.4 114639 1jztA 246 1.705 c.104.1.1 63319 1oywA 523 1.925 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1tf5A 844 2.519 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1zckA 154 3.709 1yzhA 214 4.008 c.66.1.53 124277 1fukA 165 4.014 c.37.1.19 32409 1rxdA 159 4.799 c.45.1.1 111959 1npyA 271 4.818 c.2.1.7,c.58.1.5 85995,85996 2v1xA 591 5.047 1x24A 180 5.257 2f46A 156 5.537 1zzwA 149 6.100 1igs 248 6.579 2hmaA 376 7.852 2hcrA 326 8.229 2i4iA 417 8.935 1ywfA 296 10.34 c.45.1.5 124144 2yxbA 161 10.73 2c46A 241 11.31 2c5sA 413 11.52 c.26.2.6,d.308.1.1 129950,129951 2fk8A 318 12.42 c.66.1.18 133648 2e0tA 151 12.60 3b5vA 248 12.72 2scuA 288 12.74 c.2.1.8,c.23.4.1 30303,31131 1yn9A 169 13.46 1hv8A 367 13.79 c.37.1.19,c.37.1.19 32405,32406 1vl2A 421 15.70 c.26.2.1,d.210.1.1 108708,108709 1oheA 348 15.83 c.45.1.1,c.45.1.1 87013,87014 1a53A 247 16.06 c.1.2.4 28564 2hjvA 163 16.15 2oemA 413 16.26 2f4dA 184 16.54 2hxpA 155 16.60 1elqA 390 17.71 c.67.1.3 34436 1i24A 404 18.48 c.2.1.2 83663 2j4jA 226 19.16 1ru8A 232 19.26 c.26.2.1 97849 1dkuA 317 19.37 c.61.1.2,c.61.1.2 34118,34119 2b4pA 334 19.47 2cftA 298 20.02 1a53 247 20.46 2o8nA 265 20.70 1i2cA 404 21.35 c.2.1.2 83666 1yz4A 160 21.68 1n8kA 374 22.24 b.35.1.2,c.2.1.1 80298,80299 2i6jA 161 23.11 1qorA 327 23.26 b.35.1.2,c.2.1.1 24766,29782 2imgA 151 23.29 2hoqA 241 24.57 1npdA 288 24.68 c.2.1.7,c.58.1.5 80681,80682 2hcmA 164 24.68 2eo5A 419 24.70 1yksA 440 26.41 c.37.1.14,c.37.1.14 123561,123562 1ym3A 215 27.49 2hp1A 432 28.04 1vhrA 184 28.10 c.45.1.1 32651 2yzkA 178 31.38 2d69A 430 32.60 c.1.14.1,d.58.9.1 131292,131293 1bykA 255 33.13 c.93.1.1 35706 2oycA 306 33.74 1vj0A 380 34.16 b.35.1.2,c.2.1.1 100786,100787 1j7jA 178 34.42 c.61.1.1 84131 1i9sA 210 36.48 c.45.1.1 62099 2vq3A 215 37.16 2dm6A 333 37.36 b.35.1.2,c.2.1.1 131567,131568 2yxeA 215 37.49 1vi2A 300 37.85 c.2.1.7,c.58.1.5 100726,100727 1wlyA 333 37.90 1wrmA 165 38.46 2q1sA 377 38.67 1thfD 253 39.38 c.1.2.1 28535 1zclA 180 40.72 1eo1A 124 42.03 c.55.5.1 33739 1yb5A 351 43.21 b.35.1.2,c.2.1.1 116601,116602 2b4uA 335 43.78 1vh7A 265 43.82 c.1.2.1 100646 1eyzA 392 44.52 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1jvbA 347 45.50 b.35.1.2,c.2.1.1 77181,77182 1gph1 465 45.94 2eihA 343 46.51 1mkaA 171 47.91 d.38.1.2 38543 1u24A 337 48.99 c.45.1.4 112968 1qk3A 233 49.50 c.61.1.1 34031 1bjnA 360 50.80 c.67.1.4 34469 2db3A 434 51.97 1scuA 288 52.40 c.2.1.8,c.23.4.1 30307,31135 2a0nA 265 52.50 c.1.2.1 125961 2a5vA 213 52.83 1dbrA 231 53.32 c.61.1.1 34041 2jbhA 225 53.39 2nt2A 145 53.67 1gpmA 525 54.40 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1fsgA 233 54.64 c.61.1.1 34029 2hqbA 296 54.77 1d7uA 433 54.81 c.67.1.4 34439 1ao0A 459 55.12 c.61.1.1,d.153.1.1 34049,41816 1vkrA 125 56.00 c.44.2.1 108689 1vimA 200 56.09 c.80.1.3 100758 2va8A 715 58.12 1kpgA 287 58.33 c.66.1.18 68735 2pzmA 330 58.91 2nloA 302 59.45 1ve5A 311 59.60 c.79.1.1 120013 2aeeA 211 60.00 c.61.1.1 126620 1vc4A 254 60.12 c.1.2.4 100557 1tca 317 60.20 2fcaA 213 60.27 c.66.1.53 133262 1ez1A 392 60.32 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 2c0cA 362 60.42 1bncA 449 61.06 b.84.2.1,c.30.1.1,d.142.1.2 28236,31643,41488 1z7wA 322 61.89 c.79.1.1 124674 1m6nA 802 62.29 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 2gsaA 432 62.59 c.67.1.4 34446 1l1eA 287 63.32 c.66.1.18 73454 1odkA 235 63.70 c.56.2.1 86863 2csuA 457 63.71 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1wd5A 208 64.17 c.61.1.1 114524 2j3hA 345 65.23 1nriA 306 66.04 c.80.1.3 86123 1rkxA 357 66.73 c.2.1.2 97631 1d5rA 324 68.44 b.7.1.1,c.45.1.1 23181,32697 1b5tA 275 69.16 c.1.23.1 29676 1swvA 267 69.27 c.108.1.3 112134 1p5jA 372 69.48 c.79.1.1 104067 2obnA 349 69.61 2epjA 434 70.65 1x6vA 630 71.30 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pibA 216 71.51 1hgxA 183 72.36 c.61.1.1 34027 2esbA 188 72.44 1rpmA 278 73.70 c.45.1.2 32679 1mb4A 370 74.21 c.2.1.3,d.81.1.1 78908,78909 1brmA 367 74.60 c.2.1.3,d.81.1.1 30030,39945 1vh0A 161 75.28 c.116.1.3 100626 3bwxA 285 76.60 1reqB 637 76.66 c.1.19.1,c.23.6.1 29621,31248 2yvlA 248 80.83 1fpzA 212 81.14 c.45.1.1 59976 1ek6A 348 81.14 c.2.1.2 29800 1iz0A 302 81.78 b.35.1.2,c.2.1.1 83821,83822 1y1pA 342 82.16 c.2.1.2 122550 1xtcA 194 83.24 d.166.1.1 42259 1p0fA 373 84.02 b.35.1.2,c.2.1.1 87642,87643 2e5fA 325 84.14 1by2A 121 85.21 d.170.1.1 42452 1o5oA 221 86.20 c.61.1.1 92509 2c3zA 222 87.18 2df8A 325 87.22 1u9yA 284 87.61 c.61.1.2,c.61.1.2 119655,119656 1dv1A 449 87.67 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1bf6A 291 88.61 c.1.9.3 29065