# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 3.20e-12 1e0cA 271 1.82e-11 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 2.32e-11 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 2.65e-11 c.46.1.3 65355 1yt8A 539 4.81e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhs 296 7.66e-11 2fsxA 148 1.06e-10 2eg4A 230 1.17e-10 1t3kA 152 2.78e-10 c.46.1.1 106357 1c25 161 4.98e-10 1uarA 285 5.12e-10 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 9.75e-10 c.46.1.1 32699 2a2kA 175 2.65e-09 1ymkA 175 3.24e-09 c.46.1.1 123699 1okgA 373 1.45e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 4.70e-08 1hzmA 154 7.26e-06 c.46.1.1 65975 2oucA 142 1.57e-05 2j6pA 152 0.000107 2gwfA 157 0.02626 c.46.1.4 135802 1oywA 523 3.838 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x24A 180 4.961 1zckA 154 6.039 1jztA 246 6.388 c.104.1.1 63319 1whbA 157 7.847 c.46.1.4 114639 1tf5A 844 7.911 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1rxdA 159 9.003 c.45.1.1 111959 1npyA 271 9.97 c.2.1.7,c.58.1.5 85995,85996 2scuA 288 10.13 c.2.1.8,c.23.4.1 30303,31131 2hcrA 326 12.10 1fukA 165 13.42 c.37.1.19 32409 2f46A 156 14.92 2i4iA 417 18.99 2b4pA 334 19.28 1yzhA 214 21.40 c.66.1.53 124277 1elqA 390 22.81 c.67.1.3 34436 1zzwA 149 22.84 2e0tA 151 23.14 1t5iA 172 24.77 c.37.1.19 106450 1npdA 288 26.37 c.2.1.7,c.58.1.5 80681,80682 2cftA 298 26.59 2nloA 302 27.03 1jvbA 347 27.57 b.35.1.2,c.2.1.1 77181,77182 2va8A 715 27.61 1i2cA 404 28.77 c.2.1.2 83666 2c5sA 413 29.15 c.26.2.6,d.308.1.1 129950,129951 1bykA 255 29.61 c.93.1.1 35706 2o8nA 265 30.53 1i24A 404 32.66 c.2.1.2 83663 2oycA 306 32.94 2q1sA 377 37.16 2b4uA 335 37.48 1dkuA 317 38.72 c.61.1.2,c.61.1.2 34118,34119 2hxpA 155 39.08 2c46A 241 41.34 1vi2A 300 42.11 c.2.1.7,c.58.1.5 100726,100727 2v1xA 591 42.25 1wrmA 165 45.07 2f4dA 184 45.87 1yb5A 351 48.45 b.35.1.2,c.2.1.1 116601,116602 1d5rA 324 49.17 b.7.1.1,c.45.1.1 23181,32697 2hjvA 163 49.77 2hmaA 376 52.65 1vl2A 421 53.02 c.26.2.1,d.210.1.1 108708,108709 1vjrA 271 53.22 c.108.1.14 100832 1yz4A 160 53.66 2d5cA 263 55.13 2i6jA 161 55.22 2hcmA 164 57.83 1ve5A 311 58.29 c.79.1.1 120013 1ru8A 232 59.55 c.26.2.1 97849 1ywfA 296 59.60 c.45.1.5 124144 2p4dA 172 60.71 1y1pA 342 63.45 c.2.1.2 122550 1nxzA 246 63.71 b.122.1.2,c.116.1.5 86391,86392 1zclA 180 65.49 1oi7A 288 65.70 c.2.1.8,c.23.4.1 87049,87050 2dm6A 333 67.31 b.35.1.2,c.2.1.1 131567,131568 1hv8A 367 67.60 c.37.1.19,c.37.1.19 32405,32406 1gph1 465 68.83 1rkxA 357 71.50 c.2.1.2 97631 1odkA 235 71.98 c.56.2.1 86863 1vhrA 184 72.22 c.45.1.1 32651 1qorA 327 73.67 b.35.1.2,c.2.1.1 24766,29782 1ym3A 215 73.79 2yxbA 161 74.43 2fk8A 318 74.66 c.66.1.18 133648 1rpmA 278 75.21 c.45.1.2 32679 1gpmA 525 75.65 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1i9sA 210 78.03 c.45.1.1 62099 2eggA 297 78.24 2rdmA 132 80.06 1z7wA 322 80.42 c.79.1.1 124674 1scuA 288 80.53 c.2.1.8,c.23.4.1 30307,31135 1p5jA 372 80.62 c.79.1.1 104067 1kpgA 287 81.14 c.66.1.18 68735 2esbA 188 83.36 1lt3A 240 85.59 d.166.1.1 42230 1n8kA 374 85.72 b.35.1.2,c.2.1.1 80298,80299 1yn9A 169 85.83 1ao0A 459 87.34 c.61.1.1,d.153.1.1 34049,41816 2hoqA 241 88.45