# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 6.67e-13 1e0cA 271 4.05e-12 c.46.1.2,c.46.1.2 32717,32718 1gmxA 108 5.57e-12 c.46.1.3 65355 1rhsA 296 7.50e-12 c.46.1.2,c.46.1.2 32703,32704 1yt8A 539 1.14e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2fsxA 148 2.14e-11 1rhs 296 2.72e-11 2eg4A 230 3.91e-11 1t3kA 152 6.84e-11 c.46.1.1 106357 1c25 161 1.38e-10 1uarA 285 1.41e-10 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 2.45e-10 c.46.1.1 32699 2a2kA 175 6.50e-10 1ymkA 175 8.32e-10 c.46.1.1 123699 1okgA 373 5.53e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 1.33e-08 1hzmA 154 2.97e-06 c.46.1.1 65975 2oucA 142 4.05e-06 2j6pA 152 4.60e-05 2gwfA 157 0.009514 c.46.1.4 135802 1oywA 523 3.329 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x24A 180 3.448 1jztA 246 4.493 c.104.1.1 63319 1zckA 154 4.796 1tf5A 844 5.995 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1rxdA 159 6.606 c.45.1.1 111959 1whbA 157 6.822 c.46.1.4 114639 2scuA 288 9.240 c.2.1.8,c.23.4.1 30303,31131 1npyA 271 9.99 c.2.1.7,c.58.1.5 85995,85996 2hcrA 326 11.31 1yzhA 214 13.02 c.66.1.53 124277 2f46A 156 13.57 2b4pA 334 14.84 1zzwA 149 15.26 1fukA 165 15.62 c.37.1.19 32409 2i4iA 417 20.31 2c46A 241 20.41 2oycA 306 21.16 1bykA 255 21.49 c.93.1.1 35706 2nloA 302 21.99 1wrmA 165 22.37 1t5iA 172 22.97 c.37.1.19 106450 2e0tA 151 23.08 1i2cA 404 23.09 c.2.1.2 83666 2o8nA 265 24.32 2c5sA 413 24.46 c.26.2.6,d.308.1.1 129950,129951 2b4uA 335 24.71 2cftA 298 24.94 1npdA 288 24.95 c.2.1.7,c.58.1.5 80681,80682 2va8A 715 25.65 1i24A 404 26.16 c.2.1.2 83663 2hmaA 376 26.96 2hxpA 155 27.11 1yz4A 160 29.02 1ywfA 296 30.77 c.45.1.5 124144 1elqA 390 32.02 c.67.1.3 34436 1dkuA 317 32.93 c.61.1.2,c.61.1.2 34118,34119 1zclA 180 34.51 2i6jA 161 34.53 1d5rA 324 35.10 b.7.1.1,c.45.1.1 23181,32697 2q1sA 377 35.58 1vi2A 300 37.31 c.2.1.7,c.58.1.5 100726,100727 2yxbA 161 37.37 2p4dA 172 39.36 1jvbA 347 40.39 b.35.1.2,c.2.1.1 77181,77182 2hcmA 164 41.01 1yb5A 351 41.66 b.35.1.2,c.2.1.1 116601,116602 1hv8A 367 42.23 c.37.1.19,c.37.1.19 32405,32406 2f4dA 184 44.52 1vl2A 421 44.56 c.26.2.1,d.210.1.1 108708,108709 2dm6A 333 44.57 b.35.1.2,c.2.1.1 131567,131568 1nxzA 246 45.61 b.122.1.2,c.116.1.5 86391,86392 1vjrA 271 47.40 c.108.1.14 100832 1gpmA 525 48.08 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1ru8A 232 48.56 c.26.2.1 97849 2esbA 188 49.17 1ym3A 215 49.76 2fcaA 213 50.79 c.66.1.53 133262 2j16A 182 54.44 2d5cA 263 56.35 1gph1 465 56.40 1y1pA 342 56.74 c.2.1.2 122550 2hoqA 241 56.94 1rpmA 278 57.64 c.45.1.2 32679 2v1xA 591 58.32 1i9sA 210 60.57 c.45.1.1 62099 2bdeA 470 61.91 c.108.1.23 128335 1eyzA 392 63.49 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 3ca8A 266 64.27 2fk8A 318 64.83 c.66.1.18 133648 1hwxA 501 64.84 c.2.1.7,c.58.1.1 30250,33898 1lt3A 240 64.85 d.166.1.1 42230 1igs 248 64.93 1vhrA 184 65.29 c.45.1.1 32651 2rdmA 132 66.66 2eggA 297 67.12 2imgA 151 68.57 1scuA 288 69.30 c.2.1.8,c.23.4.1 30307,31135 1rkxA 357 71.22 c.2.1.2 97631 1yn9A 169 72.59 2bjhA 260 75.08 1sb8A 352 77.46 c.2.1.2 105410 1oi7A 288 78.29 c.2.1.8,c.23.4.1 87049,87050 2yzkA 178 78.65 2bifA 469 79.33 c.37.1.7,c.60.1.4 31963,34009 2hjvA 163 79.85 5nul 138 79.92 1odkA 235 80.13 c.56.2.1 86863 1yksA 440 80.33 c.37.1.14,c.37.1.14 123561,123562 1u7pA 164 80.72 c.108.1.17 113095 1qorA 327 81.73 b.35.1.2,c.2.1.1 24766,29782 2h4vA 320 81.79 1ao0A 459 82.12 c.61.1.1,d.153.1.1 34049,41816 1p5jA 372 83.49 c.79.1.1 104067 1kpgA 287 85.68 c.66.1.18 68735 1wvgA 359 85.78 c.2.1.2 121339 1ddzA 496 85.82 c.53.2.1,c.53.2.1 33372,33373 2db3A 434 85.89 1swvA 267 86.74 c.108.1.3 112134 2r6jA 318 87.30 1tib 269 87.79 1z7wA 322 88.84 c.79.1.1 124674 2nt2A 145 88.85 1vimA 200 89.55 c.80.1.3 100758