# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 1.16e-12 1e0cA 271 6.75e-12 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 1.15e-11 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 1.33e-11 c.46.1.3 65355 1yt8A 539 2.13e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhs 296 3.72e-11 2fsxA 148 3.97e-11 2eg4A 230 6.10e-11 1t3kA 152 1.17e-10 c.46.1.1 106357 1uarA 285 2.33e-10 c.46.1.2,c.46.1.2 107762,107763 1c25 161 2.58e-10 1qb0A 211 4.15e-10 c.46.1.1 32699 2a2kA 175 1.18e-09 1ymkA 175 1.39e-09 c.46.1.1 123699 1okgA 373 8.92e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 2.72e-08 1hzmA 154 4.94e-06 c.46.1.1 65975 2oucA 142 6.46e-06 2j6pA 152 6.62e-05 2gwfA 157 0.01411 c.46.1.4 135802 1oywA 523 2.562 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x24A 180 4.057 1whbA 157 4.427 c.46.1.4 114639 1zckA 154 4.613 1jztA 246 5.339 c.104.1.1 63319 1tf5A 844 5.423 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1rxdA 159 6.585 c.45.1.1 111959 1npyA 271 9.918 c.2.1.7,c.58.1.5 85995,85996 2scuA 288 10.21 c.2.1.8,c.23.4.1 30303,31131 2b4pA 334 11.50 2hcrA 326 11.78 2f46A 156 12.33 1fukA 165 12.95 c.37.1.19 32409 1zzwA 149 13.47 2i4iA 417 14.28 1yzhA 214 14.38 c.66.1.53 124277 2e0tA 151 17.28 2oycA 306 18.83 1t5iA 172 20.32 c.37.1.19 106450 2va8A 715 20.33 2nloA 302 20.44 2cftA 298 20.86 2b4uA 335 20.88 1wrmA 165 21.86 2f4dA 184 22.76 2c46A 241 23.34 1elqA 390 24.26 c.67.1.3 34436 2c5sA 413 25.01 c.26.2.6,d.308.1.1 129950,129951 1yz4A 160 26.39 1ywfA 296 27.10 c.45.1.5 124144 2hxpA 155 27.32 1bykA 255 27.62 c.93.1.1 35706 1npdA 288 28.22 c.2.1.7,c.58.1.5 80681,80682 2o8nA 265 29.85 2hcmA 164 30.46 1i2cA 404 30.58 c.2.1.2 83666 1vjrA 271 34.06 c.108.1.14 100832 2i6jA 161 34.36 1i24A 404 34.37 c.2.1.2 83663 2p4dA 172 34.90 1vi2A 300 35.80 c.2.1.7,c.58.1.5 100726,100727 1zclA 180 36.10 1hv8A 367 36.46 c.37.1.19,c.37.1.19 32405,32406 1d5rA 324 38.30 b.7.1.1,c.45.1.1 23181,32697 2q1sA 377 41.80 1jvbA 347 41.83 b.35.1.2,c.2.1.1 77181,77182 2esbA 188 42.11 2hmaA 376 42.56 1gpmA 525 42.98 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1dkuA 317 44.87 c.61.1.2,c.61.1.2 34118,34119 2v1xA 591 45.84 2rdmA 132 47.17 1nxzA 246 47.41 b.122.1.2,c.116.1.5 86391,86392 1vhrA 184 47.52 c.45.1.1 32651 2yxbA 161 48.95 2fcaA 213 52.90 c.66.1.53 133262 2imgA 151 55.86 1vl2A 421 56.51 c.26.2.1,d.210.1.1 108708,108709 1i9sA 210 56.57 c.45.1.1 62099 1igs 248 56.99 1rpmA 278 57.20 c.45.1.2 32679 1yn9A 169 57.51 1ru8A 232 58.14 c.26.2.1 97849 2eggA 297 59.64 2d5cA 263 62.18 1yb5A 351 63.03 b.35.1.2,c.2.1.1 116601,116602 1ym3A 215 63.97 1eyzA 392 65.58 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2hoqA 241 65.78 2db3A 434 65.79 2bdeA 470 67.34 c.108.1.23 128335 2hjvA 163 68.31 1gph1 465 68.81 1u7pA 164 69.22 c.108.1.17 113095 1tib 269 70.54 1oi7A 288 70.78 c.2.1.8,c.23.4.1 87049,87050 2h4vA 320 70.90 2dm6A 333 71.49 b.35.1.2,c.2.1.1 131567,131568 2bjhA 260 72.25 2j16A 182 72.42 2yzkA 178 72.99 1vimA 200 73.86 c.80.1.3 100758 1rkxA 357 73.95 c.2.1.2 97631 1odkA 235 75.65 c.56.2.1 86863 1wvgA 359 79.36 c.2.1.2 121339 2nt2A 145 80.56 2pbnA 313 82.08 1ao0A 459 83.09 c.61.1.1,d.153.1.1 34049,41816 1qorA 327 84.28 b.35.1.2,c.2.1.1 24766,29782 1ve5A 311 84.71 c.79.1.1 120013 1y1pA 342 85.48 c.2.1.2 122550 2j4jA 226 89.03