# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 2.10e-10 1rhsA 296 9.50e-10 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 1.04e-09 c.46.1.3 65355 1e0cA 271 1.34e-09 c.46.1.2,c.46.1.2 32717,32718 1rhs 296 1.55e-09 2eg4A 230 3.56e-09 1yt8A 539 4.04e-09 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2fsxA 148 6.30e-09 1uarA 285 8.25e-09 c.46.1.2,c.46.1.2 107762,107763 1t3kA 152 1.63e-08 c.46.1.1 106357 1qb0A 211 2.13e-08 c.46.1.1 32699 1c25 161 2.63e-08 1ymkA 175 9.06e-08 c.46.1.1 123699 2a2kA 175 1.20e-07 1wv9A 94 2.59e-07 1okgA 373 3.46e-07 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 3.12e-05 1hzmA 154 9.88e-05 c.46.1.1 65975 2j6pA 152 0.000137 2gwfA 157 0.01013 c.46.1.4 135802 1whbA 157 0.6557 c.46.1.4 114639 1jztA 246 5.684 c.104.1.1 63319 2hcrA 326 7.999 1tf5A 844 8.760 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1oywA 523 9.588 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1npyA 271 17.47 c.2.1.7,c.58.1.5 85995,85996 2v1xA 591 21.84 1yzhA 214 23.29 c.66.1.53 124277 2cftA 298 23.96 1x24A 180 24.25 1zckA 154 26.49 2db3A 434 27.31 1gph1 465 33.91 2o8nA 265 34.33 2yzkA 178 36.16 2f4dA 184 37.83 2f46A 156 38.79 1hv8A 367 40.21 c.37.1.19,c.37.1.19 32405,32406 1rxdA 159 40.44 c.45.1.1 111959 1zzwA 149 41.49 1fukA 165 43.36 c.37.1.19 32409 2q1sA 377 43.64 2oycA 306 45.05 1dkuA 317 47.98 c.61.1.2,c.61.1.2 34118,34119 1ao0A 459 48.40 c.61.1.1,d.153.1.1 34049,41816 1vhrA 184 48.60 c.45.1.1 32651 2jbhA 225 51.62 2aeeA 211 54.10 c.61.1.1 126620 1odkA 235 54.23 c.56.2.1 86863 2yxeA 215 55.33 1yksA 440 55.36 c.37.1.14,c.37.1.14 123561,123562 1vl2A 421 56.76 c.26.2.1,d.210.1.1 108708,108709 2e0tA 151 58.88 1j7jA 178 58.89 c.61.1.1 84131 2fcaA 213 59.12 c.66.1.53 133262 1u9yA 284 63.19 c.61.1.2,c.61.1.2 119655,119656 2i4iA 417 63.96 1n7hA 381 64.19 c.2.1.2 80250 1gpjA 404 67.24 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1jeoA 180 67.41 c.80.1.3 66611 2imgA 151 69.13 1o5oA 221 69.43 c.61.1.1 92509 2c46A 241 70.12 1vjrA 271 73.05 c.108.1.14 100832 1i2cA 404 74.86 c.2.1.2 83666 1dbrA 231 78.43 c.61.1.1 34041 1fsgA 233 78.74 c.61.1.1 34029 1vdmA 153 78.91 c.61.1.1 119994 1vi2A 300 81.70 c.2.1.7,c.58.1.5 100726,100727 1zclA 180 81.89 1i24A 404 83.83 c.2.1.2 83663 1hg3A 225 85.80 c.1.1.1 61025 2fk8A 318 85.84 c.66.1.18 133648 2j4jA 226 86.39 1ru8A 232 87.42 c.26.2.1 97849 1bf6A 291 88.41 c.1.9.3 29065