# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 3.20e-12 1e0cA 271 9.64e-12 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 1.57e-11 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 3.15e-11 1yt8A 539 3.84e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 4.36e-11 c.46.1.3 65355 2eg4A 230 7.35e-11 2fsxA 148 1.54e-10 1t3kA 152 3.37e-10 c.46.1.1 106357 1uarA 285 4.16e-10 c.46.1.2,c.46.1.2 107762,107763 1c25 161 8.49e-10 1qb0A 211 1.19e-09 c.46.1.1 32699 2a2kA 175 3.49e-09 1ymkA 175 3.94e-09 c.46.1.1 123699 1okgA 373 6.06e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 3.34e-08 1hzmA 154 4.27e-06 c.46.1.1 65975 2oucA 142 1.53e-05 2j6pA 152 9.66e-05 2gwfA 157 0.01232 c.46.1.4 135802 1whbA 157 2.482 c.46.1.4 114639 1oywA 523 2.792 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1jztA 246 3.568 c.104.1.1 63319 1x24A 180 4.464 1zckA 154 6.368 1tf5A 844 7.495 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1rxdA 159 9.139 c.45.1.1 111959 1fukA 165 9.823 c.37.1.19 32409 2f46A 156 11.00 2hcrA 326 12.20 2v1xA 591 12.95 2c5sA 413 13.02 c.26.2.6,d.308.1.1 129950,129951 2scuA 288 15.97 c.2.1.8,c.23.4.1 30303,31131 1bykA 255 17.98 c.93.1.1 35706 1ywfA 296 18.16 c.45.1.5 124144 2hmaA 376 18.84 3ca8A 266 19.04 1npyA 271 19.54 c.2.1.7,c.58.1.5 85995,85996 1zzwA 149 21.61 2b4pA 334 22.37 1wrmA 165 23.18 2e0tA 151 23.83 2f4dA 184 25.31 1vl2A 421 26.65 c.26.2.1,d.210.1.1 108708,108709 1npdA 288 27.06 c.2.1.7,c.58.1.5 80681,80682 2nloA 302 29.23 2o8nA 265 29.77 2i4iA 417 30.12 1i2cA 404 30.96 c.2.1.2 83666 1ru8A 232 31.02 c.26.2.1 97849 1yz4A 160 31.32 1vi2A 300 31.82 c.2.1.7,c.58.1.5 100726,100727 1yzhA 214 33.34 c.66.1.53 124277 2b4uA 335 34.48 2i6jA 161 35.17 2hcmA 164 35.92 2hxpA 155 36.73 1i24A 404 38.93 c.2.1.2 83663 2q1sA 377 39.60 1vhrA 184 40.17 c.45.1.1 32651 1odkA 235 40.37 c.56.2.1 86863 2j4jA 226 41.08 2hjvA 163 42.20 1zclA 180 46.12 1d5rA 324 47.67 b.7.1.1,c.45.1.1 23181,32697 2yzkA 178 50.96 2c46A 241 51.83 1elqA 390 53.57 c.67.1.3 34436 1dkuA 317 56.78 c.61.1.2,c.61.1.2 34118,34119 1gpmA 525 58.42 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1igs 248 58.45 1jvbA 347 58.92 b.35.1.2,c.2.1.1 77181,77182 1eyzA 392 61.90 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2nt2A 145 61.91 1sb8A 352 63.84 c.2.1.2 105410 1gph1 465 64.88 1ym3A 215 67.07 2dm6A 333 68.26 b.35.1.2,c.2.1.1 131567,131568 1qorA 327 68.83 b.35.1.2,c.2.1.1 24766,29782 2c0cA 362 69.23 1fsgA 233 69.81 c.61.1.1 34029 1yb5A 351 70.41 b.35.1.2,c.2.1.1 116601,116602 2p4dA 172 73.18 1ao0A 459 73.53 c.61.1.1,d.153.1.1 34049,41816 1nxzA 246 75.06 b.122.1.2,c.116.1.5 86391,86392 2j16A 182 75.25 2yxbA 161 77.59 2yxeA 215 80.44 2esbA 188 81.99 2aeeA 211 82.25 c.61.1.1 126620 1y1pA 342 83.57 c.2.1.2 122550 2d5cA 263 83.59 2qipA 165 83.85 2imgA 151 84.27 1ez1A 392 86.35 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1rkxA 357 87.32 c.2.1.2 97631 5nul 138 87.43 1eo1A 124 89.93 c.55.5.1 33739