# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 8.44e-15 1e0cA 271 1.36e-14 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 3.25e-14 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 1.08e-13 c.46.1.3 65355 1yt8A 539 2.41e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhs 296 2.41e-13 2eg4A 230 3.71e-13 2fsxA 148 6.39e-13 1t3kA 152 1.29e-12 c.46.1.1 106357 1c25 161 5.22e-12 1uarA 285 5.36e-12 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 5.71e-12 c.46.1.1 32699 2a2kA 175 1.51e-11 1ymkA 175 3.07e-11 c.46.1.1 123699 1okgA 373 7.69e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 7.59e-10 1hzmA 154 1.34e-08 c.46.1.1 65975 2oucA 142 1.19e-06 2j6pA 152 1.35e-05 2gwfA 157 0.004722 c.46.1.4 135802 1whbA 157 1.804 c.46.1.4 114639 1ywfA 296 2.079 c.45.1.5 124144 2v1xA 591 2.777 1x24A 180 2.963 1jztA 246 2.984 c.104.1.1 63319 2eihA 343 3.820 1jvbA 347 4.132 b.35.1.2,c.2.1.1 77181,77182 2scuA 288 4.674 c.2.1.8,c.23.4.1 30303,31131 2p4dA 172 5.198 2fcaA 213 5.744 c.66.1.53 133262 1oywA 523 6.240 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1zckA 154 6.296 1rxdA 159 6.358 c.45.1.1 111959 3ca8A 266 7.091 2f46A 156 7.498 2vq3A 215 7.711 1u24A 337 8.308 c.45.1.4 112968 2hmaA 376 8.472 1pjrA 724 8.942 c.37.1.19,c.37.1.19 32391,32392 1wlyA 333 9.541 1tf5A 844 10.43 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1sffA 426 12.25 c.67.1.4 105482 2dt8A 280 13.37 2j13A 247 14.08 c.6.2.3 137934 1qorA 327 15.59 b.35.1.2,c.2.1.1 24766,29782 2c46A 241 16.39 1yz4A 160 16.51 1yzhA 214 16.64 c.66.1.53 124277 2b4uA 335 16.80 3bt7A 369 16.91 1auoA 218 16.96 c.69.1.14 34716 1nxzA 246 17.33 b.122.1.2,c.116.1.5 86391,86392 1d7uA 433 18.62 c.67.1.4 34439 2v3aA 384 18.73 2ax3A 502 20.00 c.72.1.4,c.104.1.1 127477,127478 2aeeA 211 20.61 c.61.1.1 126620 1t5iA 172 21.09 c.37.1.19 106450 1zzwA 149 21.29 1wrmA 165 21.66 2f4dA 184 21.81 1hg3A 225 22.09 c.1.1.1 61025 2cfmA 561 22.52 1vhrA 184 22.53 c.45.1.1 32651 1lt3A 240 22.89 d.166.1.1 42230 1eudA 311 22.99 c.2.1.8,c.23.4.1 30312,31140 1nuiA 255 23.76 e.13.1.2,g.41.3.2 86194,86195 2e0tA 151 24.08 1pzxA 289 24.75 c.119.1.1 95484 2b34A 199 26.79 1d5rA 324 27.26 b.7.1.1,c.45.1.1 23181,32697 1pydA 556 28.03 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2hxpA 155 28.40 1e5xA 486 28.89 c.79.1.1 59283 2j4jA 226 29.55 2j16A 182 30.22 1pvdA 537 31.80 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2aamA 309 32.08 c.1.8.15 126489 1ekjA 221 32.80 c.53.2.1 33364 2fncA 381 34.06 1wxxA 382 35.15 b.122.1.9,c.66.1.51 121418,121419 2p1zA 180 35.31 2i6jA 161 35.40 1yzvA 204 36.04 1nhp 447 36.17 2cftA 298 36.43 1p57A 114 36.75 d.170.1.2 94125 2cunA 410 37.24 2hcmA 164 37.64 2yzkA 178 38.06 2db3A 434 38.32 1rkxA 357 38.52 c.2.1.2 97631 1brmA 367 39.45 c.2.1.3,d.81.1.1 30030,39945 2yv1A 294 40.64 1zfjA 491 40.73 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1yb5A 351 41.66 b.35.1.2,c.2.1.1 116601,116602 1qpbA 563 42.19 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 3clwA 507 42.50 2elcA 329 42.70 2i4iA 417 44.54 1ym3A 215 44.57 1ct9A 553 44.78 c.26.2.1,d.153.1.1 31616,41834 2bjhA 260 45.96 2a67A 167 48.76 1nrfA 262 48.82 e.3.1.1 92086 3tmkA 216 49.86 c.37.1.1 31920 2hrzA 342 50.25 1a53 247 51.14 1t1iA 364 51.99 c.41.1.2 106248 2h4vA 320 52.05 2c5sA 413 52.07 c.26.2.6,d.308.1.1 129950,129951 2nt0A 497 52.10 b.71.1.2,c.1.8.3 138561,138562 1vmeA 410 53.64 c.23.5.1,d.157.1.3 108893,108894 1mb3A 124 54.70 c.23.1.1 78907 1ex0A 731 54.70 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1a88A 275 54.75 c.69.1.12 34707 1gc5A 467 55.28 c.72.1.3 60429 2c0cA 362 55.37 1p15A 253 56.53 c.45.1.2 93894 1igs 248 56.70 1wdpA 495 57.48 c.1.8.1 120907 1fsgA 233 59.07 c.61.1.1 34029 1pjr 724 59.17 1i9sA 210 59.25 c.45.1.1 62099 5nul 138 59.35 2yxeA 215 59.37 1a53A 247 59.55 c.1.2.4 28564 1po0A 751 61.10 f.4.3.3 94960 1pswA 348 61.34 c.87.1.7 88287 1vdeA 454 61.68 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1tzzA 392 62.07 c.1.11.2,d.54.1.1 112896,112897 1jayA 212 64.16 c.2.1.6 66478 1reoA 486 64.65 c.3.1.2,d.16.1.5 97325,97326 3bf7A 255 65.74 1jvsA 400 66.04 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1elqA 390 66.36 c.67.1.3 34436 2yxbA 161 67.23 1kijA 390 67.58 d.14.1.3,d.122.1.2 72514,72515 1p0fA 373 67.71 b.35.1.2,c.2.1.1 87642,87643 2b69A 343 67.81 c.2.1.2 127974 1qnaA 200 67.84 d.129.1.1,d.129.1.1 41226,41227 3b7fA 394 68.57 2nloA 302 68.85 1c7sA 858 69.17 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1rxwA 336 69.39 a.60.7.1,c.120.1.2 98059,98060 1yn9A 169 69.73 2imgA 151 69.90 3b5vA 248 70.59 1nbaA 264 70.92 c.33.1.3 31753 1y5iA 1246 71.12 b.52.2.2,c.81.1.1 122639,122640 1yksA 440 72.75 c.37.1.14,c.37.1.14 123561,123562 2hu5A 582 73.52 b.69.7.2,c.69.1.33 136763,136764 2dy0A 190 73.72 1dbrA 231 74.08 c.61.1.1 34041 2fk8A 318 75.19 c.66.1.18 133648 1bdfA 235 75.94 d.74.3.1,d.181.1.1 39727,42602 1tt7A 330 76.56 b.35.1.2,c.2.1.1 112623,112624 1npyA 271 76.73 c.2.1.7,c.58.1.5 85995,85996 2fbyA 205 76.76 1qba 858 79.86 2cb4A 291 80.12 1vhyA 257 82.45 b.122.1.2,c.116.1.5 100714,100715 1ebdA 455 82.55 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1vpdA 299 82.61 a.100.1.1,c.2.1.6 113951,113952 4cpvA 108 83.10 a.39.1.4 17198 2pn1A 331 83.60 2az4A 429 83.81 d.157.1.10 127597 1ryiA 382 83.90 c.3.1.2,d.16.1.3 118813,118814 1ru8A 232 84.60 c.26.2.1 97849 1ao0A 459 84.92 c.61.1.1,d.153.1.1 34049,41816 1cjcA 460 85.87 c.3.1.1,c.4.1.1 30319,30604 2i6uA 307 87.18 1kjqA 391 87.48 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1wdeA 294 88.48 c.90.1.1 114534 3c1oA 321 88.50 1pg4A 652 89.12 e.23.1.1 88067 1l5zA 155 89.38 c.23.1.1 77722