# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 4.66e-13 1e0cA 271 1.26e-12 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 1.82e-12 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 3.95e-12 1yt8A 539 5.82e-12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 6.62e-12 c.46.1.3 65355 2eg4A 230 1.39e-11 2fsxA 148 1.80e-11 1t3kA 152 3.81e-11 c.46.1.1 106357 1uarA 285 5.82e-11 c.46.1.2,c.46.1.2 107762,107763 1c25 161 1.22e-10 1qb0A 211 1.53e-10 c.46.1.1 32699 2a2kA 175 4.91e-10 1ymkA 175 5.46e-10 c.46.1.1 123699 1okgA 373 1.07e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 6.56e-09 1hzmA 154 1.09e-06 c.46.1.1 65975 2oucA 142 3.98e-06 2j6pA 152 3.25e-05 2gwfA 157 0.005646 c.46.1.4 135802 1whbA 157 1.334 c.46.1.4 114639 1oywA 523 2.336 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x24A 180 2.505 1jztA 246 3.036 c.104.1.1 63319 1zckA 154 3.966 1rxdA 159 5.192 c.45.1.1 111959 1tf5A 844 6.327 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2f46A 156 7.270 2scuA 288 8.393 c.2.1.8,c.23.4.1 30303,31131 2c5sA 413 8.428 c.26.2.6,d.308.1.1 129950,129951 1fukA 165 10.20 c.37.1.19 32409 2b4pA 334 10.35 2v1xA 591 10.73 2hcrA 326 12.06 1npyA 271 12.40 c.2.1.7,c.58.1.5 85995,85996 3ca8A 266 12.85 2b4uA 335 13.27 2hmaA 376 13.81 1ywfA 296 14.32 c.45.1.5 124144 2e0tA 151 16.11 2nloA 302 16.34 1zzwA 149 16.87 1bykA 255 17.52 c.93.1.1 35706 2f4dA 184 17.81 1yzhA 214 18.05 c.66.1.53 124277 1npdA 288 18.83 c.2.1.7,c.58.1.5 80681,80682 1i2cA 404 19.11 c.2.1.2 83666 1wrmA 165 19.45 1vl2A 421 20.33 c.26.2.1,d.210.1.1 108708,108709 2i6jA 161 22.18 1i24A 404 23.50 c.2.1.2 83663 1ru8A 232 25.71 c.26.2.1 97849 1yz4A 160 25.76 2o8nA 265 25.96 1vhrA 184 26.35 c.45.1.1 32651 2i4iA 417 27.62 1elqA 390 28.84 c.67.1.3 34436 2hcmA 164 29.05 1vi2A 300 29.25 c.2.1.7,c.58.1.5 100726,100727 1gpmA 525 30.71 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2q1sA 377 31.52 2hxpA 155 32.54 1d5rA 324 32.54 b.7.1.1,c.45.1.1 23181,32697 1igs 248 33.61 2c46A 241 37.81 2j4jA 226 38.27 2c0cA 362 40.87 1eyzA 392 41.37 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1jvbA 347 42.61 b.35.1.2,c.2.1.1 77181,77182 2hjvA 163 44.47 1sb8A 352 45.54 c.2.1.2 105410 2yzkA 178 45.91 1fsgA 233 48.33 c.61.1.1 34029 1scuA 288 48.77 c.2.1.8,c.23.4.1 30307,31135 2yxbA 161 49.02 1ym3A 215 49.25 2nt2A 145 51.47 1gph1 465 52.20 2j16A 182 53.09 1zclA 180 54.13 2qipA 165 54.38 2hcyA 347 55.60 2yxeA 215 56.55 1ao0A 459 58.21 c.61.1.1,d.153.1.1 34049,41816 2dm6A 333 59.30 b.35.1.2,c.2.1.1 131567,131568 2j3hA 345 60.44 2p4dA 172 61.35 1ez1A 392 61.83 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1dkuA 317 61.88 c.61.1.2,c.61.1.2 34118,34119 2imgA 151 63.01 2eggA 297 65.41 1yn9A 169 65.98 1y1pA 342 66.03 c.2.1.2 122550 1rkxA 357 66.71 c.2.1.2 97631 1dbrA 231 67.13 c.61.1.1 34041 1lt3A 240 67.24 d.166.1.1 42230 1nxzA 246 67.82 b.122.1.2,c.116.1.5 86391,86392 1yb5A 351 68.38 b.35.1.2,c.2.1.1 116601,116602 2d5cA 263 69.60 1qorA 327 70.88 b.35.1.2,c.2.1.1 24766,29782 5nul 138 72.10 2dplA 308 73.69 2fcaA 213 74.05 c.66.1.53 133262 1hg3A 225 74.09 c.1.1.1 61025 1ddzA 496 74.33 c.53.2.1,c.53.2.1 33372,33373 2aeeA 211 74.77 c.61.1.1 126620 1u24A 337 75.45 c.45.1.4 112968 2h4vA 320 77.80 1vhyA 257 81.29 b.122.1.2,c.116.1.5 100714,100715 2i1yA 301 81.64 1n7hA 381 82.87 c.2.1.2 80250 3b5vA 248 83.27 2b69A 343 83.44 c.2.1.2 127974 1eo1A 124 83.62 c.55.5.1 33739 1hv8A 367 87.52 c.37.1.19,c.37.1.19 32405,32406