# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 6.69e-12 1e0cA 271 2.07e-11 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 3.44e-11 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 6.46e-11 c.46.1.3 65355 1rhs 296 1.20e-10 2fsxA 148 1.35e-10 1yt8A 539 1.57e-10 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1t3kA 152 1.84e-10 c.46.1.1 106357 2eg4A 230 2.16e-10 1uarA 285 4.18e-10 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 9.41e-10 c.46.1.1 32699 1c25 161 1.30e-09 2a2kA 175 2.96e-09 1ymkA 175 3.42e-09 c.46.1.1 123699 1okgA 373 1.72e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 2.53e-08 1hzmA 154 6.04e-06 c.46.1.1 65975 2oucA 142 9.27e-06 2j6pA 152 9.88e-05 2gwfA 157 0.01178 c.46.1.4 135802 1whbA 157 3.978 c.46.1.4 114639 1x24A 180 4.576 1oywA 523 6.424 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1jztA 246 7.147 c.104.1.1 63319 1zckA 154 8.428 1rxdA 159 9.719 c.45.1.1 111959 1tf5A 844 11.48 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1zzwA 149 14.07 2scuA 288 15.79 c.2.1.8,c.23.4.1 30303,31131 1wrmA 165 19.02 2f46A 156 19.78 1ywfA 296 20.16 c.45.1.5 124144 2yxbA 161 20.62 2v1xA 591 22.60 2hcrA 326 24.09 2hxpA 155 24.41 1yzhA 214 24.56 c.66.1.53 124277 2b4pA 334 25.06 2fk8A 318 26.65 c.66.1.18 133648 2e0tA 151 28.92 1yz4A 160 30.02 2hcmA 164 31.24 2b4uA 335 33.51 1npyA 271 33.80 c.2.1.7,c.58.1.5 85995,85996 2bifA 469 34.40 c.37.1.7,c.60.1.4 31963,34009 2c5sA 413 35.15 c.26.2.6,d.308.1.1 129950,129951 2f4dA 184 36.15 1fukA 165 36.86 c.37.1.19 32409 2c46A 241 37.59 2p4dA 172 38.10 2i6jA 161 40.70 2va8A 715 41.93 1lt3A 240 42.13 d.166.1.1 42230 2cftA 298 42.43 1zclA 180 43.23 1vhrA 184 47.09 c.45.1.1 32651 1i2cA 404 47.91 c.2.1.2 83666 2j16A 182 48.04 1igs 248 48.04 3ca8A 266 48.47 2imgA 151 50.80 2i4iA 417 51.45 1ddzA 496 51.55 c.53.2.1,c.53.2.1 33372,33373 2o8nA 265 53.61 1d5rA 324 53.69 b.7.1.1,c.45.1.1 23181,32697 2hmaA 376 55.45 1yn9A 169 55.57 1i24A 404 56.13 c.2.1.2 83663 2nt2A 145 57.82 2esbA 188 58.02 1ru8A 232 60.27 c.26.2.1 97849 2eggA 297 63.02 1npdA 288 71.45 c.2.1.7,c.58.1.5 80681,80682 1i9sA 210 72.72 c.45.1.1 62099 1vl2A 421 73.56 c.26.2.1,d.210.1.1 108708,108709 1kpgA 287 79.23 c.66.1.18 68735 1vi2A 300 79.61 c.2.1.7,c.58.1.5 100726,100727 1dkuA 317 82.56 c.61.1.2,c.61.1.2 34118,34119 2nloA 302 83.31 1vimA 200 83.86 c.80.1.3 100758 2q1sA 377 84.08 3b5vA 248 85.64 2fcaA 213 88.20 c.66.1.53 133262 1hv8A 367 89.17 c.37.1.19,c.37.1.19 32405,32406