# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 1.09e-12 1e0cA 271 5.46e-12 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 8.14e-12 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 1.56e-11 c.46.1.3 65355 1rhs 296 2.18e-11 1yt8A 539 2.57e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2eg4A 230 5.10e-11 2fsxA 148 5.55e-11 1t3kA 152 1.13e-10 c.46.1.1 106357 1uarA 285 1.98e-10 c.46.1.2,c.46.1.2 107762,107763 1c25 161 3.69e-10 1qb0A 211 4.43e-10 c.46.1.1 32699 2a2kA 175 1.11e-09 1ymkA 175 1.39e-09 c.46.1.1 123699 1okgA 373 5.28e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 8.20e-09 2oucA 142 2.89e-06 1hzmA 154 6.35e-06 c.46.1.1 65975 2j6pA 152 5.79e-05 2gwfA 157 0.006438 c.46.1.4 135802 1whbA 157 0.8146 c.46.1.4 114639 1x24A 180 3.137 1oywA 523 3.314 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1jztA 246 4.681 c.104.1.1 63319 1zckA 154 4.944 1tf5A 844 5.355 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1zzwA 149 6.088 1rxdA 159 6.124 c.45.1.1 111959 2f46A 156 6.680 2scuA 288 9.317 c.2.1.8,c.23.4.1 30303,31131 2v1xA 591 11.78 2c46A 241 12.49 1fukA 165 13.02 c.37.1.19 32409 1ywfA 296 14.28 c.45.1.5 124144 1yz4A 160 15.25 2e0tA 151 15.81 1npyA 271 15.98 c.2.1.7,c.58.1.5 85995,85996 2hcrA 326 16.24 1wrmA 165 17.97 2hcmA 164 18.36 2fk8A 318 18.62 c.66.1.18 133648 2hxpA 155 18.85 2f4dA 184 18.86 1yzhA 214 20.99 c.66.1.53 124277 2b4pA 334 21.24 2c5sA 413 21.44 c.26.2.6,d.308.1.1 129950,129951 2o8nA 265 22.08 2i4iA 417 22.39 1zclA 180 22.50 2imgA 151 22.88 1gpmA 525 22.93 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2j4jA 226 23.18 2bifA 469 23.73 c.37.1.7,c.60.1.4 31963,34009 2hmaA 376 24.21 2cftA 298 26.76 1vhrA 184 26.85 c.45.1.1 32651 1i2cA 404 27.52 c.2.1.2 83666 1yn9A 169 27.71 2va8A 715 28.52 1oheA 348 30.88 c.45.1.1,c.45.1.1 87013,87014 1i24A 404 32.63 c.2.1.2 83663 2i6jA 161 33.15 1vl2A 421 35.48 c.26.2.1,d.210.1.1 108708,108709 2p4dA 172 36.34 1ru8A 232 37.57 c.26.2.1 97849 2b4uA 335 37.66 2nloA 302 38.89 1i9sA 210 39.39 c.45.1.1 62099 1dkuA 317 39.59 c.61.1.2,c.61.1.2 34118,34119 2dm6A 333 43.92 b.35.1.2,c.2.1.1 131567,131568 1igs 248 44.04 2yxbA 161 45.63 1bykA 255 46.15 c.93.1.1 35706 1scuA 288 47.34 c.2.1.8,c.23.4.1 30307,31135 2esbA 188 50.23 1d5rA 324 50.67 b.7.1.1,c.45.1.1 23181,32697 1npdA 288 52.97 c.2.1.7,c.58.1.5 80681,80682 2yv1A 294 53.58 1yb5A 351 54.20 b.35.1.2,c.2.1.1 116601,116602 2nt2A 145 56.38 1hv8A 367 56.83 c.37.1.19,c.37.1.19 32405,32406 1eo1A 124 58.27 c.55.5.1 33739 2hp1A 432 58.38 1bjnA 360 59.10 c.67.1.4 34469 1vi2A 300 62.65 c.2.1.7,c.58.1.5 100726,100727 2dplA 308 62.70 1elqA 390 63.40 c.67.1.3 34436 2c0cA 362 63.44 2q1sA 377 63.89 1vimA 200 64.28 c.80.1.3 100758 1j7jA 178 67.54 c.61.1.1 84131 1oi7A 288 69.24 c.2.1.8,c.23.4.1 87049,87050 1sb8A 352 72.86 c.2.1.2 105410 2eo5A 419 72.96 1eyzA 392 74.04 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1rkxA 357 75.48 c.2.1.2 97631 1fpzA 212 75.61 c.45.1.1 59976 1xtcA 194 76.38 d.166.1.1 42259 2yzkA 178 77.09 2hjvA 163 77.71 2fcaA 213 79.53 c.66.1.53 133262 1gph1 465 79.58 1dbrA 231 80.85 c.61.1.1 34041 2j16A 182 80.97 2j3hA 345 81.04 2e5fA 325 81.95 1u24A 337 82.12 c.45.1.4 112968 1hgxA 183 82.50 c.61.1.1 34027 1d7uA 433 82.71 c.67.1.4 34439 3b5vA 248 83.44 1kpgA 287 84.42 c.66.1.18 68735 1w23A 360 86.39 c.67.1.4 114088 1wd5A 208 86.86 c.61.1.1 114524 2db3A 434 88.03 1rpmA 278 89.82 c.45.1.2 32679 1l1eA 287 89.92 c.66.1.18 73454