# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 6.91e-13 1e0cA 271 2.73e-12 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 4.07e-12 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 9.83e-12 c.46.1.3 65355 1rhs 296 1.26e-11 1yt8A 539 1.91e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2eg4A 230 4.45e-11 2fsxA 148 4.82e-11 1uarA 285 6.19e-11 c.46.1.2,c.46.1.2 107762,107763 1t3kA 152 6.60e-11 c.46.1.1 106357 1c25 161 1.77e-10 1qb0A 211 2.72e-10 c.46.1.1 32699 2a2kA 175 6.82e-10 1ymkA 175 9.92e-10 c.46.1.1 123699 1okgA 373 4.86e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 6.77e-09 2oucA 142 3.17e-06 1hzmA 154 4.23e-06 c.46.1.1 65975 2j6pA 152 4.75e-05 2gwfA 157 0.005383 c.46.1.4 135802 1whbA 157 1.113 c.46.1.4 114639 1oywA 523 2.981 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1jztA 246 4.195 c.104.1.1 63319 1x24A 180 4.443 1zckA 154 5.249 1tf5A 844 5.288 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1rxdA 159 7.055 c.45.1.1 111959 1zzwA 149 7.573 2f46A 156 9.103 1wrmA 165 9.112 2scuA 288 9.482 c.2.1.8,c.23.4.1 30303,31131 2e0tA 151 11.15 1fukA 165 11.22 c.37.1.19 32409 2c46A 241 12.12 2hcrA 326 12.15 1ywfA 296 14.45 c.45.1.5 124144 2f4dA 184 14.68 2va8A 715 15.79 2hxpA 155 15.86 2v1xA 591 16.26 1npyA 271 16.62 c.2.1.7,c.58.1.5 85995,85996 2b4pA 334 17.41 1yz4A 160 17.99 2hcmA 164 18.66 2i4iA 417 21.22 1zclA 180 21.35 1vhrA 184 23.10 c.45.1.1 32651 2b4uA 335 25.28 2i6jA 161 25.66 2yxbA 161 26.96 1i2cA 404 28.65 c.2.1.2 83666 2c5sA 413 28.69 c.26.2.6,d.308.1.1 129950,129951 2o8nA 265 29.13 2hmaA 376 29.75 1yzhA 214 30.44 c.66.1.53 124277 2imgA 151 30.95 1i24A 404 31.64 c.2.1.2 83663 1dkuA 317 32.47 c.61.1.2,c.61.1.2 34118,34119 1gpmA 525 33.10 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1vi2A 300 33.97 c.2.1.7,c.58.1.5 100726,100727 2cftA 298 34.65 1yn9A 169 35.02 2fk8A 318 35.96 c.66.1.18 133648 2nt2A 145 36.36 1hv8A 367 36.65 c.37.1.19,c.37.1.19 32405,32406 1i9sA 210 36.96 c.45.1.1 62099 2p4dA 172 38.04 1npdA 288 40.27 c.2.1.7,c.58.1.5 80681,80682 1vl2A 421 42.02 c.26.2.1,d.210.1.1 108708,108709 2esbA 188 42.55 1oheA 348 43.53 c.45.1.1,c.45.1.1 87013,87014 1yksA 440 44.22 c.37.1.14,c.37.1.14 123561,123562 2eggA 297 44.30 2dm6A 333 44.93 b.35.1.2,c.2.1.1 131567,131568 1bykA 255 45.30 c.93.1.1 35706 2j4jA 226 45.69 2q1sA 377 46.66 2hjvA 163 49.32 2db3A 434 51.19 1ru8A 232 53.16 c.26.2.1 97849 1kpgA 287 53.90 c.66.1.18 68735 2hp1A 432 53.94 2oemA 413 54.98 2nloA 302 55.56 1d5rA 324 56.26 b.7.1.1,c.45.1.1 23181,32697 1gph1 465 61.33 1t5iA 172 65.38 c.37.1.19 106450 2bifA 469 66.52 c.37.1.7,c.60.1.4 31963,34009 1ao0A 459 68.07 c.61.1.1,d.153.1.1 34049,41816 2jbhA 225 69.97 2j16A 182 70.58 1igs 248 70.79 1yb5A 351 71.01 b.35.1.2,c.2.1.1 116601,116602 2yzkA 178 71.17 1elqA 390 71.57 c.67.1.3 34436 1fsgA 233 74.58 c.61.1.1 34029 2anpA 291 75.35 c.56.5.4 127056 1wd5A 208 80.32 c.61.1.1 114524 1sb8A 352 80.57 c.2.1.2 105410 1vimA 200 80.61 c.80.1.3 100758 1rpmA 278 80.86 c.45.1.2 32679 1l1eA 287 83.57 c.66.1.18 73454 2hoqA 241 83.76 1z7wA 322 85.13 c.79.1.1 124674 1j7jA 178 86.30 c.61.1.1 84131 1oi7A 288 88.86 c.2.1.8,c.23.4.1 87049,87050 1eo1A 124 89.32 c.55.5.1 33739 1rkxA 357 89.48 c.2.1.2 97631 2obnA 349 89.63