# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 4.81e-13 1gmxA 108 6.07e-12 c.46.1.3 65355 2fsxA 148 1.06e-11 1rhsA 296 1.42e-11 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 1.85e-11 c.46.1.2,c.46.1.2 32717,32718 1t3kA 152 3.17e-11 c.46.1.1 106357 1rhs 296 3.43e-11 1yt8A 539 4.34e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 1.72e-10 c.46.1.2,c.46.1.2 107762,107763 2eg4A 230 1.92e-10 1qb0A 211 4.44e-10 c.46.1.1 32699 1c25 161 7.16e-10 2a2kA 175 1.96e-09 1ymkA 175 2.11e-09 c.46.1.1 123699 1wv9A 94 1.68e-08 1okgA 373 6.49e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 1.23e-06 1hzmA 154 1.14e-05 c.46.1.1 65975 2j6pA 152 2.21e-05 2gwfA 157 0.000742 c.46.1.4 135802 1whbA 157 0.05146 c.46.1.4 114639 2hcrA 326 3.930 1jztA 246 6.608 c.104.1.1 63319 2yzkA 178 7.782 1x24A 180 8.432 1gph1 465 9.667 1zckA 154 10.85 2f46A 156 12.89 1yzhA 214 17.62 c.66.1.53 124277 1npyA 271 17.76 c.2.1.7,c.58.1.5 85995,85996 1zzwA 149 17.88 1rxdA 159 17.96 c.45.1.1 111959 2aeeA 211 20.68 c.61.1.1 126620 1dkuA 317 20.87 c.61.1.2,c.61.1.2 34118,34119 1hg3A 225 20.92 c.1.1.1 61025 2hmaA 376 22.75 2imgA 151 26.25 1zclA 180 26.54 2oycA 306 29.07 2v1xA 591 29.15 1vdmA 153 35.30 c.61.1.1 119994 2cftA 298 36.79 1a3cA 181 40.41 c.61.1.1 34095 2hxpA 155 40.47 1u9yA 284 41.21 c.61.1.2,c.61.1.2 119655,119656 2pzmA 330 41.69 2nt2A 145 41.93 2esbA 188 42.27 1fsgA 233 42.90 c.61.1.1 34029 2hcmA 164 43.83 1n7hA 381 44.15 c.2.1.2 80250 2f4dA 184 44.63 1wrmA 165 47.20 1oroA 213 48.08 c.61.1.1 34093 1ao0A 459 49.41 c.61.1.1,d.153.1.1 34049,41816 1yn9A 169 49.41 1tca 317 49.74 2hrzA 342 49.80 1odkA 235 49.92 c.56.2.1 86863 1vimA 200 51.35 c.80.1.3 100758 2p4dA 172 52.58 2c46A 241 52.82 2ax3A 502 53.15 c.72.1.4,c.104.1.1 127477,127478 1j7jA 178 54.70 c.61.1.1 84131 2q1sA 377 55.34 1dbrA 231 58.96 c.61.1.1 34041 2dplA 308 59.64 2i6jA 161 60.71 1opr 213 60.82 2eggA 297 61.73 1eyzA 392 61.90 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1gdhA 320 61.92 c.2.1.4,c.23.12.1 30095,31355 1ecfA 504 63.82 c.61.1.1,d.153.1.1 34053,41820 1usgA 346 67.58 c.93.1.1 99864 1gpmA 525 69.36 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1vhrA 184 69.45 c.45.1.1 32651 1vjrA 271 69.65 c.108.1.14 100832 2dy0A 190 70.05 1o5oA 221 70.49 c.61.1.1 92509 1fpzA 212 72.03 c.45.1.1 59976 1bd3A 243 73.00 c.61.1.1 34098 2o8nA 265 73.19 3ca8A 266 74.30 1sb8A 352 74.73 c.2.1.2 105410 1cjbA 231 76.32 c.61.1.1 34079 2db3A 434 78.86 2obnA 349 79.71 2j16A 182 80.65 2c5aA 379 80.73 c.2.1.2 129894 2c5sA 413 83.38 c.26.2.6,d.308.1.1 129950,129951 1mx3A 347 83.48 c.2.1.4,c.23.12.1 79638,79639 1zoiA 276 83.73 1yz4A 160 84.39 1tcaA 317 84.73 c.69.1.17 34726 1jeoA 180 88.30 c.80.1.3 66611 3clkA 290 88.48