# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 4.29e-10 1e0cA 271 1.67e-09 c.46.1.2,c.46.1.2 32717,32718 1uarA 285 7.93e-09 c.46.1.2,c.46.1.2 107762,107763 1yt8A 539 1.21e-08 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhsA 296 2.07e-08 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 3.83e-08 c.46.1.3 65355 1rhs 296 4.07e-08 2eg4A 230 3.87e-07 1qb0A 211 2.09e-06 c.46.1.1 32699 1c25 161 4.19e-06 1ymkA 175 6.63e-06 c.46.1.1 123699 2fsxA 148 6.71e-06 1okgA 373 7.73e-06 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1t3kA 152 9.70e-06 c.46.1.1 106357 2a2kA 175 1.86e-05 1wv9A 94 2.49e-05 2gwfA 157 0.000613 c.46.1.4 135802 2j6pA 152 0.000680 2oucA 142 0.000896 1hzmA 154 0.008032 c.46.1.1 65975 1whbA 157 0.01067 c.46.1.4 114639 1dkuA 317 1.764 c.61.1.2,c.61.1.2 34118,34119 2v1xA 591 2.328 1u9yA 284 2.697 c.61.1.2,c.61.1.2 119655,119656 1i9sA 210 2.878 c.45.1.1 62099 1t6t1 118 3.699 1pe1A 267 3.723 c.1.10.4 94591 1zhaA 267 4.238 2eklA 313 6.098 2qdxA 257 6.179 2pi1A 334 6.204 1j4aA 333 6.256 c.2.1.4,c.23.12.1 71502,71503 1lroA 267 6.810 c.1.10.4 78161 2dbqA 334 7.694 2c46A 241 8.388 2uz0A 263 9.505 2nwrA 267 9.658 1xcbA 211 9.833 a.4.5.38,c.2.1.12 109552,109553 1a8pA 258 9.99 b.43.4.2,c.25.1.1 25654,31544 1ao0A 459 10.46 c.61.1.1,d.153.1.1 34049,41816 1o60A 292 10.53 c.1.10.4 92532 1pswA 348 10.53 c.87.1.7 88287 2hdoA 209 13.87 c.108.1.6 136345 2bgiA 272 14.14 1wwkA 307 15.41 1ny1A 240 15.57 c.6.2.3 86395 1hv8A 367 15.86 c.37.1.19,c.37.1.19 32405,32406 2dy0A 190 18.60 2i4iA 417 19.17 1lzlA 323 21.59 c.69.1.2 78306 1d9eA 284 21.60 c.1.10.4 29195 2zbtA 297 22.20 1mo0A 275 22.52 c.1.1.1 79329 1ygyA 529 22.55 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2hcrA 326 22.64 1yacA 208 23.39 c.33.1.3 31757 1mx3A 347 23.44 c.2.1.4,c.23.12.1 79638,79639 2g76A 335 23.53 1o5oA 221 23.54 c.61.1.1 92509 1psdA 409 24.19 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2cc0A 195 24.39 c.6.2.3 130209 1bd3A 243 24.54 c.61.1.1 34098 1e39A 571 25.01 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1tph1 247 25.24 1pjrA 724 25.66 c.37.1.19,c.37.1.19 32391,32392 1q9iA 571 26.37 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1oywA 523 26.40 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2yvqA 143 26.64 1zu0A 529 27.78 1h7mA 102 27.82 d.79.3.1 83485 1c1dA 355 31.44 c.2.1.7,c.58.1.1 30270,33918 3b5eA 223 31.63 1w5fA 353 31.99 c.32.1.1,d.79.2.1 114247,114248 2vq3A 215 32.00 1jjiA 311 32.11 c.69.1.2 66766 2g5cA 281 32.25 a.100.1.12,c.2.1.6 134646,134647 2bo1A 101 33.15 2pd2A 108 33.78 2cukA 311 33.85 2yxdA 183 35.19 1sc6A 404 35.26 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1ofgA 381 35.29 c.2.1.3,d.81.1.5 30064,39979 1ixcA 294 35.89 a.4.5.37,c.94.1.1 83764,83765 1qjdA 571 36.76 a.138.1.3,c.3.1.4,d.168.1.1 19695,30432,42315 1o5xA 248 37.40 c.1.1.1 92528 2dp3A 257 37.42 1s9rA 410 39.13 d.126.1.4 98758 1qgoA 264 39.42 c.92.1.2 35596 1dppA 507 40.30 c.94.1.1 35800 2fcaA 213 40.48 c.66.1.53 133262 1npyA 271 41.19 c.2.1.7,c.58.1.5 85995,85996 1vhvA 268 41.77 c.90.1.1 100704 1ixkA 315 43.02 c.66.1.38 90716 1d1gA 168 43.21 c.71.1.1 34889 1xr4A 509 43.47 c.124.1.2,c.124.1.2 115860,115861 1gdhA 320 45.37 c.2.1.4,c.23.12.1 30095,31355 1d2fA 390 46.00 c.67.1.3 34411 2dstA 131 46.09 2r8bA 251 46.46 2h9bA 312 46.81 1bw9A 356 47.97 c.2.1.7,c.58.1.1 30274,33922 1m64A 571 48.31 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 1pjr 724 48.53 1amk 251 48.68 1o7dA 298 49.36 c.6.2.1 86641 1neyA 247 50.05 c.1.1.1 80449 1zjcA 418 50.50 e.60.1.1 125147 2o7rA 338 50.90 1qb7A 236 50.99 c.61.1.1 34087 2uyoA 310 51.13 1im5A 180 51.50 c.33.1.3 66211 1jjtA 228 52.35 d.157.1.1 63139 2z3zA 706 53.09 1dxyA 333 53.73 c.2.1.4,c.23.12.1 30094,31354 2vhxA 377 54.30 3cvjA 243 56.70 1lj1A 571 56.99 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 1ff9A 450 57.12 c.2.1.3,d.81.1.2 30039,39954 1n55A 251 57.16 c.1.1.1 80007 1xocA 520 57.61 c.94.1.1 122201 2flsA 132 57.97 2o1eA 312 58.25 1jztA 246 58.55 c.104.1.1 63319 2c0cA 362 58.55 2is6A 680 59.00 2gmwA 211 59.03 1yn9A 169 59.06 1dxy 333 59.60 1x13A 401 60.52 2axqA 467 61.39 1ionA 243 61.73 c.37.1.10 62633 1rq2A 382 62.57 c.32.1.1,d.79.2.1 105048,105049 1dpeA 507 63.00 c.94.1.1 35799 2jgdA 933 63.86 1nrzA 164 63.98 c.38.1.1 86131 1l6sA 323 65.27 c.1.10.3 73627 1ble 163 65.28 2hm7A 310 67.01 1w41A 101 67.08 1zlqA 502 67.67 c.94.1.1 125253 1gzgA 337 69.72 c.1.10.3 70805 2grvA 621 70.10 1xdzA 240 70.11 c.66.1.20 115196 2yyvA 227 70.68 1w5nA 337 71.41 2dt5A 211 72.06 a.4.5.38,c.2.1.12 131708,131709 3c4vA 426 72.50 1vrvA 101 72.62 2nv2A 294 72.67 1kssA 571 73.23 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1gph1 465 73.57 1pjcA 361 73.91 c.2.1.4,c.23.12.2 30101,31361 1wx1A 335 74.28 1orvA 728 74.34 b.70.3.1,c.69.1.24 87354,87355 1jkeA 145 75.19 c.110.1.1 66791 2d0iA 333 75.80 1jjeA 222 76.15 d.157.1.1 63117 2d5lA 706 76.90 2f46A 156 78.30 1nf9A 207 78.49 c.33.1.3 85631 2o7iA 592 78.69 2ehjA 208 78.99 1ihuA 589 79.08 c.37.1.10,c.37.1.10 62394,62395 2nooA 502 79.20 1jj2M 186 79.59 c.55.4.1 63098 1lxyA 409 80.73 d.126.1.4 91154 1y81A 138 80.91 c.2.1.8 122731 1lw3A 657 80.94 b.55.1.8,c.45.1.3 91152,91153 1oheA 348 81.41 c.45.1.1,c.45.1.1 87013,87014 2fi1A 190 82.55 c.108.1.3 133508 1p2hA 571 82.58 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1h6dA 433 83.77 c.2.1.3,d.81.1.5 65656,65657 1w5qA 337 84.65 1bf6A 291 84.85 c.1.9.3 29065 2hi0A 240 86.12 2a67A 167 86.12 3bi1A 709 86.64 1b3sD 90 87.06 c.9.1.1 30846 1j0fA 100 87.65 c.47.1.14 90739 2b34A 199 88.71 1wg8A 285 88.94 a.60.13.1,c.66.1.23 114605,114606 1zckA 154 89.45