# List of top-scoring protein chains for T0411.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhsA	296	1.01e-12	c.46.1.2,c.46.1.2	32703,32704
1dp2A	293	1.07e-12	c.46.1.2,c.46.1.2	32705,32706
1rhdA	293	1.17e-12	c.46.1.2,c.46.1.2	32715,32716
1uarA	285	2.49e-12	c.46.1.2,c.46.1.2	107762,107763
1urhA	280	1.84e-11	c.46.1.2,c.46.1.2	99829,99830
1e0cA	271	2.56e-10	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	3.78e-09		
2eg4A	230	4.36e-09		
2ifdA	175	7.72e-08		
1tq1A	129	7.81e-08	c.46.1.3	107198
1ymkA	175	8.39e-08	c.46.1.1	123699
1cwtA	178	8.41e-08	c.46.1.1	32702
1qb0A	211	9.42e-08	c.46.1.1	32699
1qxnA	137	1.04e-07	c.46.1.3	96537
1c25A	161	2.48e-07	c.46.1.1	32698
2ifvA	175	2.74e-07		
2a2kA	175	4.06e-07		
1gmxA	108	9.21e-07	c.46.1.3	65355
1okgA	373	2.44e-06	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2k0zA	110	5.12e-06		
2fsxA	148	8.66e-06		
1yt8A	539	1.23e-05	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2j6pA	152	0.000853		
1t3kA	152	0.003848	c.46.1.1	106357
1hzmA	154	0.004046	c.46.1.1	65975
1wv9A	94	0.01365		
2oucA	142	0.1425		
1veeA	134	1.257		
2gwfA	157	9.826	c.46.1.4	135802
1wqaA	455	11.00		
1whbA	157	14.69	c.46.1.4	114639
1i2oA	316	15.13	c.1.10.1	61574
2j13A	247	21.26	c.6.2.3	137934
1bt3A	345	22.97	a.86.1.2	18507
1x31B	404	23.66		
1npyA	271	29.60	c.2.1.7,c.58.1.5	85995,85996
2fdrA	229	32.81	c.108.1.6	133319
1vi6A	208	35.77	c.23.15.1	100736
2gagB	405	43.32		
2yxeA	215	44.26		
2f46A	156	47.11		
2qm1A	326	49.56		
1ejbA	168	72.00	c.16.1.1	59417
1ywfA	296	79.20	c.45.1.5	124144