# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 1.13e-12 1rhsA 296 3.77e-12 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 6.47e-12 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 1.03e-11 1qb0A 211 1.72e-10 c.46.1.1 32699 1yt8A 539 2.40e-10 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 2.98e-10 c.46.1.2,c.46.1.2 107762,107763 1whbA 157 3.14e-10 c.46.1.4 114639 1t3kA 152 4.30e-10 c.46.1.1 106357 1gmxA 108 5.56e-10 c.46.1.3 65355 2fsxA 148 9.43e-10 2a2kA 175 1.44e-09 2j6pA 152 2.62e-09 1ymkA 175 4.74e-09 c.46.1.1 123699 2gwfA 157 7.09e-09 c.46.1.4 135802 2eg4A 230 8.26e-09 1okgA 373 1.66e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 1.73e-07 1wv9A 94 5.84e-07 2f46A 156 0.7714 2i6jA 161 4.371 2hcrA 326 7.283 1rxdA 159 12.15 c.45.1.1 111959 1yn9A 169 12.90 1oheA 348 14.94 c.45.1.1,c.45.1.1 87013,87014 1c4oA 664 15.52 c.37.1.19,c.37.1.19 32415,32416 1u24A 337 16.09 c.45.1.4 112968 1uqwA 509 19.60 c.94.1.1 99799 2hxpA 155 20.11 1yz4A 160 20.96 2gcgA 330 21.42 2b4uA 335 21.45 1riiA 265 23.65 c.60.1.1 111807 1wrmA 165 23.88 1fpzA 212 23.98 c.45.1.1 59976 1xdzA 240 24.17 c.66.1.20 115196 1yksA 440 24.38 c.37.1.14,c.37.1.14 123561,123562 2b4pA 334 24.77 1oywA 523 26.92 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2r0bA 154 26.98 2hcmA 164 29.68 1ywfA 296 30.58 c.45.1.5 124144 2j16A 182 32.96 2hmaA 376 36.24 2v1xA 591 37.87 1wlyA 333 37.98 2o4cA 380 38.47 1vhrA 184 39.51 c.45.1.1 32651 1zzwA 149 39.55 1dkuA 317 40.37 c.61.1.2,c.61.1.2 34118,34119 1d5rA 324 41.59 b.7.1.1,c.45.1.1 23181,32697 2vq3A 215 41.71 1vl2A 421 42.26 c.26.2.1,d.210.1.1 108708,108709 1k92A 455 42.68 c.26.2.1,d.210.1.1 68325,68326 1yb5A 351 42.79 b.35.1.2,c.2.1.1 116601,116602 2eihA 343 42.96 2nt2A 145 43.56 1n8kA 374 44.25 b.35.1.2,c.2.1.1 80298,80299 1qorA 327 44.33 b.35.1.2,c.2.1.1 24766,29782 2c5sA 413 45.99 c.26.2.6,d.308.1.1 129950,129951 2gxaA 274 47.26 2az4A 429 48.51 d.157.1.10 127597 2p4dA 172 50.32 2jhfA 374 50.50 b.35.1.2,c.2.1.1 138314,138315 1bf6A 291 51.07 c.1.9.3 29065 2esbA 188 51.52 2eplX 627 51.86 2f4dA 184 52.24 2q1sA 377 52.92 2fcaA 213 55.17 c.66.1.53 133262 1yxyA 234 55.88 c.1.2.5 124203 2hk9A 275 56.14 1vhyA 257 56.84 b.122.1.2,c.116.1.5 100714,100715 1f8fA 371 57.56 b.35.1.2,c.2.1.1 83246,83247 1p0kA 349 58.87 c.1.4.1 87648 1vj0A 380 59.59 b.35.1.2,c.2.1.1 100786,100787 1a4iA 301 60.91 c.2.1.7,c.58.1.2 30278,33926 1ekjA 221 62.39 c.53.2.1 33364 2e7uA 424 64.38 1u8tA 129 68.64 c.23.1.1 113192 1vi2A 300 70.25 c.2.1.7,c.58.1.5 100726,100727 1lv7A 257 71.77 c.37.1.20 78232 1qhfA 240 72.13 c.60.1.1 33960 2h1rA 299 72.58 2a0nA 265 72.93 c.1.2.1 125961 2p6xA 309 73.37 1o9gA 250 73.40 c.66.1.29 86692 1ydgA 211 73.44 c.23.5.8 116614 2z0jA 237 74.48 1r26A 125 74.51 c.47.1.1 96847 2dm6A 333 74.95 b.35.1.2,c.2.1.1 131567,131568 1dpeA 507 75.01 c.94.1.1 35799 2c1iA 431 76.50 c.6.2.3,d.341.1.1 129636,129637 1dosA 358 78.23 c.1.10.2 29175 1cjbA 231 79.52 c.61.1.1 34079 1dcfA 136 80.46 c.23.1.2 31124 2e0tA 151 82.56 3cwvA 369 84.23 1tqjA 230 85.03 c.1.2.2 107228 1zsyA 357 88.96 2c46A 241 89.17