# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 1.89e-11 1e0cA 271 4.40e-11 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 6.05e-11 c.46.1.2,c.46.1.2 32703,32704 2hhgA 139 1.00e-10 1qb0A 211 7.38e-10 c.46.1.1 32699 1uarA 285 7.48e-10 c.46.1.2,c.46.1.2 107762,107763 1yt8A 539 1.54e-09 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1whbA 157 1.78e-09 c.46.1.4 114639 1t3kA 152 3.49e-09 c.46.1.1 106357 1gmxA 108 4.61e-09 c.46.1.3 65355 2a2kA 175 6.55e-09 2fsxA 148 7.51e-09 2j6pA 152 1.42e-08 1ymkA 175 1.80e-08 c.46.1.1 123699 2gwfA 157 3.84e-08 c.46.1.4 135802 2eg4A 230 4.56e-08 1okgA 373 8.06e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 7.95e-07 1wv9A 94 2.81e-06 2f46A 156 1.021 2i6jA 161 8.082 2hcrA 326 8.191 1rxdA 159 8.932 c.45.1.1 111959 1n8kA 374 13.86 b.35.1.2,c.2.1.1 80298,80299 1yn9A 169 13.88 1c4oA 664 14.34 c.37.1.19,c.37.1.19 32415,32416 2jhfA 374 14.61 b.35.1.2,c.2.1.1 138314,138315 2b4pA 334 14.70 1f8fA 371 15.45 b.35.1.2,c.2.1.1 83246,83247 1oheA 348 16.77 c.45.1.1,c.45.1.1 87013,87014 1u24A 337 18.63 c.45.1.4 112968 2gcgA 330 18.86 2b4uA 335 18.90 2az4A 429 18.97 d.157.1.10 127597 1fpzA 212 19.68 c.45.1.1 59976 2hxpA 155 19.94 1yb5A 351 21.51 b.35.1.2,c.2.1.1 116601,116602 1p0fA 373 21.63 b.35.1.2,c.2.1.1 87642,87643 1wrmA 165 22.62 1ywfA 296 23.34 c.45.1.5 124144 1i9sA 210 23.70 c.45.1.1 62099 2c46A 241 24.06 1yz4A 160 25.61 1u3wA 374 26.81 b.35.1.2,c.2.1.1 113013,113014 2j16A 182 28.81 1wlyA 333 31.11 1k92A 455 31.34 c.26.2.1,d.210.1.1 68325,68326 1zzwA 149 31.67 2r0bA 154 32.12 2vq3A 215 32.72 2hmaA 376 33.63 1ekjA 221 33.89 c.53.2.1 33364 2nt2A 145 34.96 1d5rA 324 35.79 b.7.1.1,c.45.1.1 23181,32697 2dm6A 333 35.83 b.35.1.2,c.2.1.1 131567,131568 1uqwA 509 35.96 c.94.1.1 99799 1dkuA 317 36.45 c.61.1.2,c.61.1.2 34118,34119 2eihA 343 37.12 1qorA 327 38.29 b.35.1.2,c.2.1.1 24766,29782 2p4dA 172 41.40 2hcmA 164 42.61 1r26A 125 44.72 c.47.1.1 96847 2v1xA 591 45.00 2esbA 188 47.23 2q1sA 377 48.42 2gxaA 274 49.18 1yxyA 234 50.85 c.1.2.5 124203 1xdzA 240 51.36 c.66.1.20 115196 2imgA 151 51.58 1riiA 265 51.62 c.60.1.1 111807 2j3hA 345 52.86 1mb3A 124 53.80 c.23.1.1 78907 1jvbA 347 54.40 b.35.1.2,c.2.1.1 77181,77182 1vj0A 380 54.54 b.35.1.2,c.2.1.1 100786,100787 1dpeA 507 60.34 c.94.1.1 35799 1vl2A 421 60.38 c.26.2.1,d.210.1.1 108708,108709 2o4cA 380 60.64 1vhrA 184 61.39 c.45.1.1 32651 2e7uA 424 63.31 1yqdA 366 63.73 2c5sA 413 63.77 c.26.2.6,d.308.1.1 129950,129951 1y9aA 360 64.64 1p0kA 349 67.43 c.1.4.1 87648 2pbfA 227 70.07 2ouiA 360 70.09 2qr3A 140 70.38 1o9gA 250 70.92 c.66.1.29 86692 1pl8A 356 71.38 b.35.1.2,c.2.1.1 94878,94879 2z0jA 237 72.01 2fcaA 213 72.01 c.66.1.53 133262 2f4dA 184 72.62 1i1nA 226 73.92 c.66.1.7 71102 2p6xA 309 74.89 1u9yA 284 78.12 c.61.1.2,c.61.1.2 119655,119656 2hcyA 347 79.15 1yksA 440 80.20 c.37.1.14,c.37.1.14 123561,123562 1dcfA 136 80.26 c.23.1.2 31124 1u8tA 129 83.29 c.23.1.1 113192 2fh7A 595 87.89 1lv7A 257 88.74 c.37.1.20 78232