# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 2.87e-16 1rhsA 296 8.00e-16 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 3.95e-15 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 9.07e-15 1uarA 285 5.00e-14 c.46.1.2,c.46.1.2 107762,107763 1yt8A 539 9.34e-14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1qb0A 211 5.33e-13 c.46.1.1 32699 2fsxA 148 2.13e-12 1gmxA 108 2.85e-12 c.46.1.3 65355 1whbA 157 3.51e-12 c.46.1.4 114639 1t3kA 152 4.80e-12 c.46.1.1 106357 2j6pA 152 6.31e-12 2a2kA 175 9.08e-12 2eg4A 230 9.24e-12 1okgA 373 4.21e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1ymkA 175 5.76e-11 c.46.1.1 123699 2gwfA 157 1.05e-10 c.46.1.4 135802 2oucA 142 1.67e-09 1wv9A 94 1.18e-08 2f46A 156 0.4497 1a53 247 2.318 2i6jA 161 4.684 1uqwA 509 6.230 c.94.1.1 99799 1oheA 348 7.525 c.45.1.1,c.45.1.1 87013,87014 1yn9A 169 7.652 1yxyA 234 10.33 c.1.2.5 124203 1n8kA 374 10.68 b.35.1.2,c.2.1.1 80298,80299 2jhfA 374 11.77 b.35.1.2,c.2.1.1 138314,138315 1vi2A 300 11.93 c.2.1.7,c.58.1.5 100726,100727 1a53A 247 13.59 c.1.2.4 28564 1p0fA 373 14.07 b.35.1.2,c.2.1.1 87642,87643 1oywA 523 14.29 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2b4pA 334 14.69 1u3wA 374 14.73 b.35.1.2,c.2.1.1 113013,113014 2hcrA 326 16.41 1yb5A 351 17.52 b.35.1.2,c.2.1.1 116601,116602 1bf6A 291 17.91 c.1.9.3 29065 1f8fA 371 18.35 b.35.1.2,c.2.1.1 83246,83247 2hxpA 155 18.91 2eihA 343 19.02 2c5sA 413 19.55 c.26.2.6,d.308.1.1 129950,129951 1npyA 271 20.88 c.2.1.7,c.58.1.5 85995,85996 2oemA 413 21.05 1c4oA 664 21.66 c.37.1.19,c.37.1.19 32415,32416 1vhrA 184 22.02 c.45.1.1 32651 1yksA 440 22.12 c.37.1.14,c.37.1.14 123561,123562 1yz4A 160 22.83 1wlyA 333 22.94 2hcmA 164 23.01 1rkdA 309 23.30 c.72.1.1 34928 1xdzA 240 23.36 c.66.1.20 115196 1zzwA 149 24.20 1qorA 327 24.23 b.35.1.2,c.2.1.1 24766,29782 2p4gA 270 25.05 2b4uA 335 25.18 2j4jA 226 26.61 1mb3A 124 26.85 c.23.1.1 78907 2f4dA 184 28.43 1vj0A 380 28.55 b.35.1.2,c.2.1.1 100786,100787 1rxdA 159 29.02 c.45.1.1 111959 2r0bA 154 29.20 1fpzA 212 29.96 c.45.1.1 59976 3cggA 195 30.20 2nt2A 145 30.32 1tqjA 230 34.24 c.1.2.2 107228 2c46A 241 34.43 1te2A 226 34.89 c.108.1.6 106792 2e0tA 151 35.44 1ywfA 296 36.30 c.45.1.5 124144 1ekjA 221 36.57 c.53.2.1 33364 1dpeA 507 36.61 c.94.1.1 35799 1vl2A 421 36.63 c.26.2.1,d.210.1.1 108708,108709 2basA 431 37.33 c.1.33.1,d.110.6.2 128244,128245 1k92A 455 39.90 c.26.2.1,d.210.1.1 68325,68326 2i6xA 211 40.38 1i9sA 210 41.52 c.45.1.1 62099 1gpjA 404 41.60 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 3b5vA 248 42.22 1pl8A 356 42.77 b.35.1.2,c.2.1.1 94878,94879 2csuA 457 43.56 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2esbA 188 44.51 1a2xA 159 44.75 a.39.1.5 17251 2e7uA 424 45.04 1u24A 337 45.59 c.45.1.4 112968 2vq3A 215 45.78 2r6oA 294 47.29 1y9aA 360 50.50 1wrmA 165 51.81 2j3hA 345 52.24 2ouiA 360 52.65 2imgA 151 52.84 1hyhA 309 56.05 c.2.1.5,d.162.1.1 30150,42117 2o4cA 380 56.12 2dm6A 333 56.19 b.35.1.2,c.2.1.1 131567,131568 2c71A 216 56.24 c.6.2.3 130017 2a0nA 265 56.85 c.1.2.1 125961 1u8tA 129 58.43 c.23.1.1 113192 2j16A 182 58.45 1lzlA 323 58.49 c.69.1.2 78306 2gxaA 274 58.72 2az4A 429 59.88 d.157.1.10 127597 2v1xA 591 60.45 2v8oA 444 60.53 2hk9A 275 61.66 2qdxA 257 62.69 2b0cA 206 63.02 c.108.1.2 127633 1h5yA 253 63.13 c.1.2.1 65638 1thfD 253 63.18 c.1.2.1 28535 2eo5A 419 63.37 2z6rA 265 64.67 1d5rA 324 65.07 b.7.1.1,c.45.1.1 23181,32697 1v7zA 260 66.09 c.125.1.1 100488 2fcaA 213 66.24 c.66.1.53 133262 2hmaA 376 66.83 1dosA 358 68.85 c.1.10.2 29175 2h1rA 299 69.17 2hi0A 240 69.55 1r26A 125 69.93 c.47.1.1 96847 1u0sY 118 69.93 c.23.1.1 107566 3cwvA 369 71.59 1hnjA 317 71.63 c.95.1.2,c.95.1.2 35969,35970 2b3zA 373 72.48 c.71.1.2,c.97.1.2 127807,127808 2om6A 235 72.79 2hf9A 226 73.26 2hoqA 241 74.16 1rd5A 262 74.20 c.1.2.4 111772 1byi 224 75.56 2bmaA 470 81.75 2d69A 430 82.92 c.1.14.1,d.58.9.1 131292,131293 1zwxA 301 83.13 d.151.1.3 125752 2d5cA 263 83.77 1d3gA 367 83.97 c.1.4.1 28600 1riiA 265 84.63 c.60.1.1 111807 1j0dA 341 84.72 c.79.1.1 83902 1z6bA 154 85.53 d.38.1.6 124510 1zrnA 232 85.88 c.108.1.1 43323 1u4nA 310 85.93 c.69.1.2 113021 1dbwA 126 86.06 c.23.1.1 31095 2nloA 302 89.08 1ydgA 211 89.69 c.23.5.8 116614