# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 3.43e-13 1rhsA 296 9.03e-13 c.46.1.2,c.46.1.2 32703,32704 2hhgA 139 1.73e-12 1e0cA 271 2.20e-12 c.46.1.2,c.46.1.2 32717,32718 1uarA 285 4.85e-11 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 5.11e-11 c.46.1.1 32699 1gmxA 108 8.96e-11 c.46.1.3 65355 1yt8A 539 9.51e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2fsxA 148 1.90e-10 1whbA 157 3.25e-10 c.46.1.4 114639 1t3kA 152 3.41e-10 c.46.1.1 106357 2a2kA 175 5.22e-10 2j6pA 152 1.54e-09 2eg4A 230 2.01e-09 2gwfA 157 3.00e-09 c.46.1.4 135802 1ymkA 175 3.17e-09 c.46.1.1 123699 1okgA 373 7.60e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 1.10e-07 1wv9A 94 5.78e-07 2f46A 156 2.290 2hcrA 326 8.084 2i6jA 161 8.441 1rxdA 159 11.55 c.45.1.1 111959 1c4oA 664 14.81 c.37.1.19,c.37.1.19 32415,32416 1yn9A 169 20.89 1uqwA 509 23.04 c.94.1.1 99799 1xdzA 240 23.87 c.66.1.20 115196 1mb3A 124 26.18 c.23.1.1 78907 1fpzA 212 26.60 c.45.1.1 59976 2jhfA 374 28.84 b.35.1.2,c.2.1.1 138314,138315 1vi2A 300 30.55 c.2.1.7,c.58.1.5 100726,100727 1n8kA 374 30.58 b.35.1.2,c.2.1.1 80298,80299 1bf6A 291 30.95 c.1.9.3 29065 1a53 247 34.41 1yz4A 160 34.60 2nloA 302 34.70 2az4A 429 36.82 d.157.1.10 127597 1i9sA 210 38.64 c.45.1.1 62099 1oheA 348 38.93 c.45.1.1,c.45.1.1 87013,87014 1u3wA 374 41.03 b.35.1.2,c.2.1.1 113013,113014 2c46A 241 42.64 2hxpA 155 43.64 1f8fA 371 44.75 b.35.1.2,c.2.1.1 83246,83247 1yb5A 351 45.82 b.35.1.2,c.2.1.1 116601,116602 1p0fA 373 47.94 b.35.1.2,c.2.1.1 87642,87643 1u24A 337 47.96 c.45.1.4 112968 1ywfA 296 48.89 c.45.1.5 124144 1npyA 271 51.39 c.2.1.7,c.58.1.5 85995,85996 1wrmA 165 54.81 2fvyA 309 57.09 c.93.1.1 134227 2b4pA 334 59.32 2r0bA 154 59.51 2j16A 182 61.55 1u8tA 129 62.18 c.23.1.1 113192 1p0kA 349 62.52 c.1.4.1 87648 1yksA 440 63.21 c.37.1.14,c.37.1.14 123561,123562 2gcgA 330 63.58 1zzwA 149 64.29 1e5xA 486 64.55 c.79.1.1 59283 1dcfA 136 64.68 c.23.1.2 31124 1dbwA 126 65.50 c.23.1.1 31095 2hk9A 275 66.00 2dm6A 333 67.35 b.35.1.2,c.2.1.1 131567,131568 2v1xA 591 69.79 2p4dA 172 70.01 2b4uA 335 71.47 2e7uA 424 73.80 1kgsA 225 75.34 a.4.6.1,c.23.1.1 68596,68597 1d5rA 324 76.88 b.7.1.1,c.45.1.1 23181,32697 1gpjA 404 77.58 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2fshA 853 77.76 2eihA 343 80.62 1ys7A 233 81.29 a.4.6.1,c.23.1.1 123961,123962 2p4gA 270 81.52 1riiA 265 82.90 c.60.1.1 111807 2hcmA 164 83.37 1zd1A 284 83.85 1ekjA 221 83.94 c.53.2.1 33364 1vhrA 184 84.93 c.45.1.1 32651 1t3iA 420 85.38 c.67.1.3 106354 2pbfA 227 87.90 2fcaA 213 88.34 c.66.1.53 133262 1dz3A 130 89.69 c.23.1.1 31105 1dkuA 317 89.70 c.61.1.2,c.61.1.2 34118,34119