# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 3.69e-13 1rhsA 296 1.14e-12 c.46.1.2,c.46.1.2 32703,32704 2hhgA 139 1.79e-12 1e0cA 271 2.68e-12 c.46.1.2,c.46.1.2 32717,32718 1qb0A 211 5.83e-11 c.46.1.1 32699 1uarA 285 8.67e-11 c.46.1.2,c.46.1.2 107762,107763 1gmxA 108 1.09e-10 c.46.1.3 65355 1yt8A 539 1.40e-10 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2fsxA 148 2.72e-10 1t3kA 152 3.68e-10 c.46.1.1 106357 1whbA 157 4.49e-10 c.46.1.4 114639 2a2kA 175 5.60e-10 2j6pA 152 1.48e-09 2eg4A 230 3.19e-09 1ymkA 175 3.50e-09 c.46.1.1 123699 2gwfA 157 3.62e-09 c.46.1.4 135802 1okgA 373 1.01e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 1.36e-07 1wv9A 94 6.71e-07 2f46A 156 1.845 2i6jA 161 8.369 1rxdA 159 8.580 c.45.1.1 111959 2hcrA 326 9.316 1c4oA 664 13.84 c.37.1.19,c.37.1.19 32415,32416 1uqwA 509 20.94 c.94.1.1 99799 1yn9A 169 22.33 1mb3A 124 22.37 c.23.1.1 78907 1xdzA 240 24.12 c.66.1.20 115196 1bf6A 291 28.55 c.1.9.3 29065 1fpzA 212 28.73 c.45.1.1 59976 1yz4A 160 29.18 2jhfA 374 29.52 b.35.1.2,c.2.1.1 138314,138315 1n8kA 374 30.35 b.35.1.2,c.2.1.1 80298,80299 2az4A 429 32.82 d.157.1.10 127597 1u24A 337 33.01 c.45.1.4 112968 1a53 247 33.45 1vi2A 300 34.52 c.2.1.7,c.58.1.5 100726,100727 1oheA 348 35.83 c.45.1.1,c.45.1.1 87013,87014 1f8fA 371 36.59 b.35.1.2,c.2.1.1 83246,83247 2hxpA 155 36.85 1p0fA 373 38.71 b.35.1.2,c.2.1.1 87642,87643 1i9sA 210 38.97 c.45.1.1 62099 2nloA 302 39.98 1u8tA 129 45.19 c.23.1.1 113192 1npyA 271 45.32 c.2.1.7,c.58.1.5 85995,85996 1yb5A 351 45.74 b.35.1.2,c.2.1.1 116601,116602 1ywfA 296 46.73 c.45.1.5 124144 2b4uA 335 47.34 2c46A 241 49.59 1wrmA 165 49.60 2fvyA 309 50.24 c.93.1.1 134227 1dbwA 126 51.88 c.23.1.1 31095 1u3wA 374 51.90 b.35.1.2,c.2.1.1 113013,113014 1e5xA 486 52.02 c.79.1.1 59283 2j16A 182 52.13 2hk9A 275 53.56 2b4pA 334 53.73 1zzwA 149 56.68 2gcgA 330 56.73 2r0bA 154 57.04 1kgsA 225 58.17 a.4.6.1,c.23.1.1 68596,68597 1ys7A 233 58.89 a.4.6.1,c.23.1.1 123961,123962 1yksA 440 59.05 c.37.1.14,c.37.1.14 123561,123562 2dm6A 333 61.55 b.35.1.2,c.2.1.1 131567,131568 2v1xA 591 62.40 1d5rA 324 62.42 b.7.1.1,c.45.1.1 23181,32697 2o4cA 380 65.78 2p4gA 270 65.97 1ekjA 221 66.44 c.53.2.1 33364 2fshA 853 66.98 1p0kA 349 67.75 c.1.4.1 87648 1d3gA 367 68.13 c.1.4.1 28600 2qr3A 140 69.88 2p6xA 309 72.18 1dcfA 136 72.54 c.23.1.2 31124 2c5sA 413 73.31 c.26.2.6,d.308.1.1 129950,129951 2p4dA 172 74.52 1mvoA 136 74.60 c.23.1.1 79513 1gpjA 404 77.13 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2e7uA 424 77.47 1e5eA 404 77.94 c.67.1.3 59265 2jbaA 127 79.08 1qorA 327 79.33 b.35.1.2,c.2.1.1 24766,29782 1jbeA 128 81.08 c.23.1.1 62845 1musA 477 82.00 c.55.3.4 79494 2q1sA 377 82.21 1dz3A 130 82.60 c.23.1.1 31105 1srrA 124 83.25 c.23.1.1 31110 1riiA 265 83.34 c.60.1.1 111807 2hcmA 164 84.01 2pbfA 227 84.27 1t3iA 420 84.63 c.67.1.3 106354 1b00A 127 87.94 c.23.1.1 31122 1u0sY 118 89.87 c.23.1.1 107566