# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 1.08e-12 1rhsA 296 3.17e-12 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 5.96e-12 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 6.27e-12 1qb0A 211 1.15e-10 c.46.1.1 32699 1uarA 285 1.47e-10 c.46.1.2,c.46.1.2 107762,107763 1gmxA 108 2.38e-10 c.46.1.3 65355 1yt8A 539 4.47e-10 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2fsxA 148 5.08e-10 1t3kA 152 6.71e-10 c.46.1.1 106357 1whbA 157 6.89e-10 c.46.1.4 114639 2a2kA 175 1.04e-09 2j6pA 152 2.54e-09 2gwfA 157 5.94e-09 c.46.1.4 135802 1ymkA 175 6.02e-09 c.46.1.1 123699 2eg4A 230 6.78e-09 1okgA 373 1.86e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 1.94e-07 1wv9A 94 1.09e-06 2f46A 156 2.029 2i6jA 161 8.385 1rxdA 159 10.55 c.45.1.1 111959 2hcrA 326 10.91 1yn9A 169 16.24 1c4oA 664 16.80 c.37.1.19,c.37.1.19 32415,32416 2az4A 429 22.10 d.157.1.10 127597 1mb3A 124 22.42 c.23.1.1 78907 1u24A 337 26.03 c.45.1.4 112968 1uqwA 509 26.71 c.94.1.1 99799 1xdzA 240 27.36 c.66.1.20 115196 1yz4A 160 27.58 1i9sA 210 28.70 c.45.1.1 62099 1bf6A 291 29.38 c.1.9.3 29065 1fpzA 212 29.44 c.45.1.1 59976 1oheA 348 30.55 c.45.1.1,c.45.1.1 87013,87014 1a53 247 32.04 2jhfA 374 32.20 b.35.1.2,c.2.1.1 138314,138315 2c46A 241 36.67 1n8kA 374 36.97 b.35.1.2,c.2.1.1 80298,80299 2b4uA 335 37.47 2hxpA 155 38.67 2b4pA 334 39.22 1f8fA 371 42.02 b.35.1.2,c.2.1.1 83246,83247 1wrmA 165 42.62 2nloA 302 45.28 1vi2A 300 47.86 c.2.1.7,c.58.1.5 100726,100727 1yb5A 351 49.66 b.35.1.2,c.2.1.1 116601,116602 2fvyA 309 49.94 c.93.1.1 134227 1d5rA 324 52.10 b.7.1.1,c.45.1.1 23181,32697 1p0fA 373 52.60 b.35.1.2,c.2.1.1 87642,87643 1zzwA 149 52.66 2hk9A 275 52.75 1ekjA 221 53.66 c.53.2.1 33364 2gcgA 330 54.16 1u8tA 129 56.32 c.23.1.1 113192 1ywfA 296 57.05 c.45.1.5 124144 1kgsA 225 58.21 a.4.6.1,c.23.1.1 68596,68597 1e5xA 486 58.44 c.79.1.1 59283 1npyA 271 59.67 c.2.1.7,c.58.1.5 85995,85996 2p4gA 270 60.63 2j16A 182 60.64 2c5sA 413 62.68 c.26.2.6,d.308.1.1 129950,129951 2p4dA 172 63.65 2qr3A 140 65.11 2r0bA 154 67.28 2pbfA 227 68.94 1vhrA 184 68.99 c.45.1.1 32651 1dbwA 126 69.65 c.23.1.1 31095 1ys7A 233 71.62 a.4.6.1,c.23.1.1 123961,123962 1u3wA 374 72.12 b.35.1.2,c.2.1.1 113013,113014 1musA 477 72.32 c.55.3.4 79494 1gpjA 404 73.24 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2hcmA 164 73.69 2jbaA 127 75.53 1dcfA 136 77.55 c.23.1.2 31124 1zd1A 284 78.53 2p6xA 309 79.68 2fshA 853 81.05 1d3gA 367 81.97 c.1.4.1 28600 2e7uA 424 84.80 1yksA 440 84.88 c.37.1.14,c.37.1.14 123561,123562 2f4dA 184 85.39 1qorA 327 85.86 b.35.1.2,c.2.1.1 24766,29782 2dm6A 333 86.17 b.35.1.2,c.2.1.1 131567,131568 2o4cA 380 86.31 1b00A 127 86.83 c.23.1.1 31122 1dz3A 130 86.87 c.23.1.1 31105 2esbA 188 87.33 2z0jA 237 88.11 1o9gA 250 88.38 c.66.1.29 86692 1o13A 136 88.56 c.55.5.1 80762 1gca 309 89.61 1jbeA 128 89.65 c.23.1.1 62845