# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhs	296	1.07e-14		
1rhsA	296	3.22e-14	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	5.15e-14	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	5.29e-14		
1yt8A	539	1.36e-12	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1qb0A	211	1.98e-12	c.46.1.1	32699
1uarA	285	2.88e-12	c.46.1.2,c.46.1.2	107762,107763
1gmxA	108	3.15e-12	c.46.1.3	65355
1t3kA	152	5.45e-12	c.46.1.1	106357
1whbA	157	5.70e-12	c.46.1.4	114639
2j6pA	152	1.85e-11		
2a2kA	175	2.09e-11		
2fsxA	148	2.38e-11		
2eg4A	230	9.19e-11		
1okgA	373	2.17e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2gwfA	157	3.13e-10	c.46.1.4	135802
1ymkA	175	3.79e-10	c.46.1.1	123699
2oucA	142	6.19e-09		
1wv9A	94	1.57e-08		
2f46A	156	1.133		
2hcrA	326	4.459		
1oheA	348	6.594	c.45.1.1,c.45.1.1	87013,87014
2i6jA	161	7.395		
1yn9A	169	10.77		
1c4oA	664	14.78	c.37.1.19,c.37.1.19	32415,32416
1oywA	523	17.79	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
1d5rA	324	19.21	b.7.1.1,c.45.1.1	23181,32697
1fpzA	212	22.16	c.45.1.1	59976
2iw0A	254	23.10	c.6.2.3	137737
1vhrA	184	29.86	c.45.1.1	32651
2f4dA	184	30.21		
1bf6A	291	30.24	c.1.9.3	29065
2c46A	241	30.46		
2o8nA	265	31.72		
1zzwA	149	32.22		
2hxpA	155	32.40		
1u9yA	284	33.64	c.61.1.2,c.61.1.2	119655,119656
1vl2A	421	34.68	c.26.2.1,d.210.1.1	108708,108709
2p4dA	172	35.26		
1rxdA	159	37.19	c.45.1.1	111959
1dkuA	317	37.94	c.61.1.2,c.61.1.2	34118,34119
2r0bA	154	42.46		
2v1xA	591	44.12		
2j16A	182	45.59		
2vq3A	215	46.38		
1ecfA	504	47.47	c.61.1.1,d.153.1.1	34053,41820
2hcmA	164	47.80		
2c71A	216	48.72	c.6.2.3	130017
1a4iA	301	49.48	c.2.1.7,c.58.1.2	30278,33926
2esbA	188	50.28		
1gpjA	404	53.78	a.151.1.1,c.2.1.7,d.58.39.1	65451,65452,65453
2q1sA	377	53.79		
1pswA	348	55.42	c.87.1.7	88287
2gv8A	447	56.41	c.3.1.5,c.3.1.5	135759,135760
1r26A	125	57.27	c.47.1.1	96847
1kpgA	287	57.96	c.66.1.18	68735
1yz4A	160	58.11		
1k92A	455	58.53	c.26.2.1,d.210.1.1	68325,68326
2px6A	316	58.90		
1a0p	290	60.39		
2jhfA	374	61.81	b.35.1.2,c.2.1.1	138314,138315
1jx6A	342	62.07	c.93.1.1	67406
2e0tA	151	62.54		
1i9sA	210	65.53	c.45.1.1	62099
2nt2A	145	66.65		
1reqB	637	68.40	c.1.19.1,c.23.6.1	29621,31248
2imgA	151	70.99		
1u24A	337	75.03	c.45.1.4	112968
1cjbA	231	75.64	c.61.1.1	34079
1wdpA	495	76.41	c.1.8.1	120907
1hqvA	191	77.17	a.39.1.8	61160
1y1xA	191	77.32	a.39.1.8	116374
1wrmA	165	77.79		
1a2xA	159	79.45	a.39.1.5	17251
2rjoA	332	82.16		
2z0jA	237	83.42		
1topA	162	84.05	a.39.1.5	17223
1m1zA	513	84.85	c.26.2.1,d.153.1.1	78457,78458
1vmeA	410	88.31	c.23.5.1,d.157.1.3	108893,108894