# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 1.50e-14 1rhsA 296 5.48e-14 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 1.16e-13 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 1.38e-13 1uarA 285 2.72e-12 c.46.1.2,c.46.1.2 107762,107763 1yt8A 539 2.95e-12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1qb0A 211 3.80e-12 c.46.1.1 32699 1whbA 157 1.68e-11 c.46.1.4 114639 2fsxA 148 1.76e-11 1t3kA 152 3.10e-11 c.46.1.1 106357 1gmxA 108 3.34e-11 c.46.1.3 65355 2a2kA 175 4.10e-11 2j6pA 152 9.19e-11 2eg4A 230 1.87e-10 1okgA 373 2.19e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1ymkA 175 3.47e-10 c.46.1.1 123699 2gwfA 157 4.28e-10 c.46.1.4 135802 2oucA 142 1.49e-08 1wv9A 94 1.32e-07 2f46A 156 1.045 2i6jA 161 4.890 2hcrA 326 5.270 1c4oA 664 9.672 c.37.1.19,c.37.1.19 32415,32416 1yn9A 169 14.91 1u24A 337 17.88 c.45.1.4 112968 2jhfA 374 19.24 b.35.1.2,c.2.1.1 138314,138315 1fpzA 212 19.65 c.45.1.1 59976 1n8kA 374 19.90 b.35.1.2,c.2.1.1 80298,80299 1yz4A 160 21.11 2hxpA 155 21.56 1oheA 348 21.77 c.45.1.1,c.45.1.1 87013,87014 1f8fA 371 21.90 b.35.1.2,c.2.1.1 83246,83247 1vi2A 300 22.05 c.2.1.7,c.58.1.5 100726,100727 1xdzA 240 23.00 c.66.1.20 115196 2v1xA 591 25.06 1yb5A 351 28.45 b.35.1.2,c.2.1.1 116601,116602 2hcmA 164 30.31 1rxdA 159 30.32 c.45.1.1 111959 1riiA 265 30.61 c.60.1.1 111807 1wrmA 165 31.15 2r0bA 154 31.31 1qorA 327 31.85 b.35.1.2,c.2.1.1 24766,29782 1ywfA 296 32.37 c.45.1.5 124144 1uqwA 509 32.72 c.94.1.1 99799 1p0kA 349 34.61 c.1.4.1 87648 1vj0A 380 35.28 b.35.1.2,c.2.1.1 100786,100787 2j3hA 345 35.74 1p0fA 373 36.03 b.35.1.2,c.2.1.1 87642,87643 1u3wA 374 36.21 b.35.1.2,c.2.1.1 113013,113014 1zzwA 149 37.30 1yksA 440 37.50 c.37.1.14,c.37.1.14 123561,123562 2c5sA 413 37.84 c.26.2.6,d.308.1.1 129950,129951 1vhrA 184 38.22 c.45.1.1 32651 2p4dA 172 38.86 2j16A 182 38.98 2j4jA 226 39.30 1dkuA 317 39.34 c.61.1.2,c.61.1.2 34118,34119 1vl2A 421 40.82 c.26.2.1,d.210.1.1 108708,108709 2f4dA 184 41.72 1bf6A 291 42.52 c.1.9.3 29065 2dm6A 333 42.72 b.35.1.2,c.2.1.1 131567,131568 1a53 247 44.18 2hk9A 275 45.04 2b4uA 335 45.49 2nt2A 145 45.73 2eihA 343 46.18 1r26A 125 46.27 c.47.1.1 96847 1i9sA 210 46.29 c.45.1.1 62099 1wlyA 333 47.95 2nloA 302 48.30 2eplX 627 49.46 1yxyA 234 51.03 c.1.2.5 124203 2c46A 241 51.22 2esbA 188 52.35 2e0tA 151 54.80 2vq3A 215 55.24 2b4pA 334 55.26 1oywA 523 57.18 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1y9aA 360 57.85 1ekjA 221 60.44 c.53.2.1 33364 2gxaA 274 61.00 1i1nA 226 66.05 c.66.1.7 71102 2fcaA 213 67.31 c.66.1.53 133262 2qr3A 140 67.68 2hmaA 376 68.22 1d5rA 324 71.51 b.7.1.1,c.45.1.1 23181,32697 1u8tA 129 71.76 c.23.1.1 113192 2pbfA 227 72.13 2e7uA 424 75.70 1z15A 344 75.85 1cjbA 231 77.41 c.61.1.1 34079 1a2xA 159 79.58 a.39.1.5 17251 2imgA 151 79.78 2q1sA 377 79.79 2ouiA 360 80.79 3cwvA 369 81.02 2p4gA 270 81.59 1zsyA 357 81.84 1k92A 455 82.90 c.26.2.1,d.210.1.1 68325,68326 1ecfA 504 83.08 c.61.1.1,d.153.1.1 34053,41820 2fshA 853 84.20 1qhfA 240 87.52 c.60.1.1 33960 2o4cA 380 87.83 1pl8A 356 89.41 b.35.1.2,c.2.1.1 94878,94879 1dosA 358 89.62 c.1.10.2 29175