# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 9.68e-16 1e0cA 271 2.57e-15 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 2.94e-15 c.46.1.2,c.46.1.2 32703,32704 2hhgA 139 7.41e-15 1yt8A 539 1.10e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 3.17e-13 c.46.1.2,c.46.1.2 107762,107763 1gmxA 108 5.70e-13 c.46.1.3 65355 1t3kA 152 1.05e-12 c.46.1.1 106357 1qb0A 211 1.21e-12 c.46.1.1 32699 1whbA 157 1.77e-12 c.46.1.4 114639 2fsxA 148 2.22e-12 1okgA 373 6.64e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2a2kA 175 9.96e-12 2j6pA 152 1.04e-11 2eg4A 230 1.28e-11 2gwfA 157 7.34e-11 c.46.1.4 135802 1ymkA 175 1.48e-10 c.46.1.1 123699 2oucA 142 3.83e-09 1wv9A 94 1.72e-08 2f46A 156 0.7883 1d2mA 665 1.931 c.37.1.19,c.37.1.19 32417,32418 1c4oA 664 4.682 c.37.1.19,c.37.1.19 32415,32416 2i6jA 161 4.758 1qhfA 240 5.204 c.60.1.1 33960 1mb3A 124 5.488 c.23.1.1 78907 1sffA 426 6.043 c.67.1.4 105482 1u24A 337 6.212 c.45.1.4 112968 2eihA 343 6.469 1a53 247 6.471 1qorA 327 7.108 b.35.1.2,c.2.1.1 24766,29782 1riiA 265 7.202 c.60.1.1 111807 1e5xA 486 7.523 c.79.1.1 59283 1k0fA 277 7.823 c.92.2.2 71974 2v1xA 591 7.896 2b4pA 334 8.749 1wlyA 333 10.28 2az4A 429 10.88 d.157.1.10 127597 1ecfA 504 11.40 c.61.1.1,d.153.1.1 34053,41820 2rjoA 332 11.60 2c46A 241 12.91 2z83A 459 15.13 1u8tA 129 15.70 c.23.1.1 113192 1ekjA 221 16.01 c.53.2.1 33364 1yn9A 169 16.57 2og2A 359 17.27 1yz4A 160 18.38 1dkuA 317 18.65 c.61.1.2,c.61.1.2 34118,34119 2olgA 278 18.83 1pjrA 724 19.05 c.37.1.19,c.37.1.19 32391,32392 1fpzA 212 19.64 c.45.1.1 59976 2gcgA 330 19.76 1k55A 246 19.90 e.3.1.1 68156 1vhrA 184 20.17 c.45.1.1 32651 1pjr 724 20.21 1rxdA 159 20.46 c.45.1.1 111959 1wdpA 495 20.73 c.1.8.1 120907 1bf6A 291 21.98 c.1.9.3 29065 1i9sA 210 22.23 c.45.1.1 62099 1tqjA 230 22.64 c.1.2.2 107228 2om6A 235 23.11 1vr0A 247 23.19 c.148.1.1 120428 1l3iA 192 23.22 c.66.1.22 77676 2ipxA 233 23.90 1yb5A 351 24.03 b.35.1.2,c.2.1.1 116601,116602 2eplX 627 24.49 2hxpA 155 24.51 1gc0A 398 26.05 c.67.1.3 70168 2j4jA 226 26.32 1npyA 271 26.51 c.2.1.7,c.58.1.5 85995,85996 1sgvA 316 27.17 b.122.1.1,d.265.1.2 98858,98859 2r0bA 154 27.82 2p4dA 172 28.64 1ydnA 295 28.93 1wy7A 207 30.09 c.66.1.32 121433 1jvbA 347 30.09 b.35.1.2,c.2.1.1 77181,77182 1yhtA 367 32.77 c.1.8.6 123213 2dm6A 333 32.94 b.35.1.2,c.2.1.1 131567,131568 1vmeA 410 33.67 c.23.5.1,d.157.1.3 108893,108894 2aznA 219 34.15 c.71.1.2 127608 1u6eA 335 34.56 c.95.1.2,c.95.1.2 119568,119569 1lv7A 257 35.94 c.37.1.20 78232 1wrmA 165 36.04 2hcmA 164 36.71 2f4dA 184 36.72 2gjlA 328 36.79 2oemA 413 36.95 2j16A 182 37.20 2pbfA 227 37.49 2fq6A 415 40.46 c.67.1.3 133939 1pg4A 652 41.12 e.23.1.1 88067 2p4gA 270 41.53 1ozhA 566 43.10 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1pl8A 356 43.19 b.35.1.2,c.2.1.1 94878,94879 2e0tA 151 43.31 2vq3A 215 43.71 2qtzA 539 44.90 1ywfA 296 45.63 c.45.1.5 124144 2hmaA 376 45.78 2r9zA 463 46.68 1i1nA 226 46.88 c.66.1.7 71102 2debA 653 48.08 1zsyA 357 48.10 1zzwA 149 48.87 1y0eA 223 49.63 c.1.2.5 116297 2p6pA 384 50.81 2fh7A 595 53.23 2nt2A 145 54.21 3c86A 328 56.04 2as0A 396 56.46 b.122.1.9,c.66.1.51 127227,127228 1nrwA 288 56.62 c.108.1.10 86128 1dz3A 130 57.12 c.23.1.1 31105 1jbeA 128 57.37 c.23.1.1 62845 1b5pA 385 58.27 c.67.1.1 90403 1p15A 253 60.07 c.45.1.2 93894 2j3hA 345 60.80 1zgzA 122 61.36 c.23.1.1 125065 1yxyA 234 61.73 c.1.2.5 124203 1ys7A 233 62.22 a.4.6.1,c.23.1.1 123961,123962 1u0sY 118 63.80 c.23.1.1 107566 1ct9A 553 64.22 c.26.2.1,d.153.1.1 31616,41834 2yv1A 294 64.46 2fi1A 190 64.49 c.108.1.3 133508 1mvoA 136 64.54 c.23.1.1 79513 1h5yA 253 64.97 c.1.2.1 65638 1rd5A 262 65.62 c.1.2.4 111772 3b6iA 198 67.14 2dt8A 280 67.27 1rroA 108 67.31 a.39.1.4 17195 2bneA 241 69.07 c.73.1.3 128824 5palA 109 69.27 a.39.1.4 17215 2piaA 321 69.50 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1a53A 247 71.07 c.1.2.4 28564 1toaA 313 71.07 c.92.2.2 35598 2dri 271 71.31 2imgA 151 73.15 1p0kA 349 73.22 c.1.4.1 87648 2hf9A 226 73.58 1a4iA 301 74.49 c.2.1.7,c.58.1.2 30278,33926 1srrA 124 74.72 c.23.1.1 31110 2pkeA 251 75.11 1pzxA 289 75.41 c.119.1.1 95484 1r26A 125 76.77 c.47.1.1 96847 1cjbA 231 77.76 c.61.1.1 34079 1u9yA 284 78.11 c.61.1.2,c.61.1.2 119655,119656 1ve1A 304 78.29 c.79.1.1 120007 2c5sA 413 79.11 c.26.2.6,d.308.1.1 129950,129951 3c8dA 403 79.31 2b3zA 373 80.15 c.71.1.2,c.97.1.2 127807,127808 2dh2A 424 80.58 2fliA 220 80.65 c.1.2.2 133714 1fc4A 401 80.67 c.67.1.4 59760 1byi 224 81.06 1dcfA 136 82.38 c.23.1.2 31124 2px6A 316 82.54 1pcxA 810 82.62 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 3cggA 195 83.47 1z15A 344 83.86 1ep3A 311 85.43 c.1.4.1 28597 1mrgA 263 89.62 d.165.1.1 42183