# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhs	296	2.71e-14		
1rhsA	296	9.25e-14	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	1.74e-13	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	2.65e-13		
1uarA	285	3.22e-12	c.46.1.2,c.46.1.2	107762,107763
1yt8A	539	4.26e-12	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1qb0A	211	5.57e-12	c.46.1.1	32699
2fsxA	148	2.40e-11		
1whbA	157	2.76e-11	c.46.1.4	114639
1t3kA	152	3.81e-11	c.46.1.1	106357
1gmxA	108	4.48e-11	c.46.1.3	65355
2a2kA	175	5.58e-11		
2j6pA	152	1.01e-10		
1okgA	373	2.24e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	2.56e-10		
1ymkA	175	4.23e-10	c.46.1.1	123699
2gwfA	157	6.39e-10	c.46.1.4	135802
2oucA	142	2.04e-08		
1wv9A	94	1.04e-07		
2f46A	156	0.7907		
2i6jA	161	3.703		
2hcrA	326	5.301		
1c4oA	664	6.544	c.37.1.19,c.37.1.19	32415,32416
1yn9A	169	13.05		
1fpzA	212	15.05	c.45.1.1	59976
1yz4A	160	15.85		
1oheA	348	16.45	c.45.1.1,c.45.1.1	87013,87014
1u24A	337	16.47	c.45.1.4	112968
1vi2A	300	18.09	c.2.1.7,c.58.1.5	100726,100727
1rxdA	159	18.14	c.45.1.1	111959
2v1xA	591	18.45		
2hxpA	155	18.47		
2c5sA	413	19.89	c.26.2.6,d.308.1.1	129950,129951
1vl2A	421	21.18	c.26.2.1,d.210.1.1	108708,108709
2hcmA	164	21.51		
1vj0A	380	22.91	b.35.1.2,c.2.1.1	100786,100787
1wrmA	165	24.26		
2jhfA	374	25.06	b.35.1.2,c.2.1.1	138314,138315
1vhrA	184	25.36	c.45.1.1	32651
2r0bA	154	25.58		
1n8kA	374	26.99	b.35.1.2,c.2.1.1	80298,80299
2b4uA	335	27.81		
2f4dA	184	27.82		
1zzwA	149	28.01		
1ywfA	296	28.51	c.45.1.5	124144
1yksA	440	29.53	c.37.1.14,c.37.1.14	123561,123562
1xdzA	240	29.94	c.66.1.20	115196
1f8fA	371	30.89	b.35.1.2,c.2.1.1	83246,83247
1qorA	327	31.46	b.35.1.2,c.2.1.1	24766,29782
2j3hA	345	31.49		
2j16A	182	31.71		
2nt2A	145	31.79		
2b4pA	334	31.93		
2p4dA	172	31.93		
1dkuA	317	33.69	c.61.1.2,c.61.1.2	34118,34119
1p0kA	349	34.38	c.1.4.1	87648
1i9sA	210	35.24	c.45.1.1	62099
1riiA	265	35.91	c.60.1.1	111807
1yb5A	351	36.16	b.35.1.2,c.2.1.1	116601,116602
2c46A	241	38.04		
2esbA	188	38.77		
1uqwA	509	39.72	c.94.1.1	99799
1bf6A	291	43.86	c.1.9.3	29065
2eplX	627	44.18		
2dm6A	333	45.04	b.35.1.2,c.2.1.1	131567,131568
2pbfA	227	45.50		
2eihA	343	45.73		
2nloA	302	46.20		
1p0fA	373	46.35	b.35.1.2,c.2.1.1	87642,87643
2vq3A	215	46.65		
2e0tA	151	47.27		
2hk9A	275	47.47		
1oywA	523	48.73	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
1y9aA	360	48.81		
1yxyA	234	48.97	c.1.2.5	124203
1k92A	455	49.02	c.26.2.1,d.210.1.1	68325,68326
2gxaA	274	49.61		
2e7uA	424	49.99		
1wlyA	333	50.28		
2hmaA	376	50.42		
2qr3A	140	52.11		
1d5rA	324	53.30	b.7.1.1,c.45.1.1	23181,32697
1ekjA	221	54.05	c.53.2.1	33364
1a53	247	54.21		
1i1nA	226	55.11	c.66.1.7	71102
1zsyA	357	55.18		
2j4jA	226	56.41		
1e5eA	404	58.49	c.67.1.3	59265
2imgA	151	59.01		
1ecfA	504	59.45	c.61.1.1,d.153.1.1	34053,41820
1u3wA	374	60.39	b.35.1.2,c.2.1.1	113013,113014
1zupA	315	63.65	c.55.3.11	125681
2ouiA	360	64.74		
1u8tA	129	65.89	c.23.1.1	113192
1r26A	125	66.39	c.47.1.1	96847
2p4gA	270	66.65		
1z15A	344	66.83		
1cjbA	231	68.13	c.61.1.1	34079
2q1sA	377	69.58		
1d3gA	367	71.47	c.1.4.1	28600
1usgA	346	71.88	c.93.1.1	99864
2fcaA	213	74.50	c.66.1.53	133262
1zd1A	284	74.74		
1mb3A	124	76.30	c.23.1.1	78907
1dz3A	130	76.32	c.23.1.1	31105
2o4cA	380	78.36		
1pl8A	356	78.46	b.35.1.2,c.2.1.1	94878,94879
2z0jA	237	79.53		
2fvyA	309	80.75	c.93.1.1	134227
1dosA	358	85.79	c.1.10.2	29175
2csuA	457	86.29	c.2.1.8,c.23.4.1,c.23.4.1	130781,130782,130783
1o9gA	250	86.40	c.66.1.29	86692
2v8oA	444	87.21		
2hcyA	347	88.41		
1yqdA	366	89.50