# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhs	296	1.13e-14		
1rhsA	296	4.71e-14	c.46.1.2,c.46.1.2	32703,32704
2hhgA	139	8.40e-14		
1e0cA	271	9.02e-14	c.46.1.2,c.46.1.2	32717,32718
1qb0A	211	7.22e-13	c.46.1.1	32699
1whbA	157	1.55e-12	c.46.1.4	114639
1uarA	285	3.12e-12	c.46.1.2,c.46.1.2	107762,107763
1t3kA	152	4.11e-12	c.46.1.1	106357
1yt8A	539	4.39e-12	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1gmxA	108	1.03e-11	c.46.1.3	65355
2a2kA	175	1.31e-11		
2fsxA	148	1.44e-11		
2j6pA	152	5.22e-11		
2gwfA	157	7.05e-11	c.46.1.4	135802
1ymkA	175	1.03e-10	c.46.1.1	123699
2eg4A	230	2.55e-10		
1okgA	373	3.15e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2oucA	142	2.83e-09		
1wv9A	94	4.42e-08		
2f46A	156	0.8087		
2i6jA	161	5.096		
1yn9A	169	9.623		
1c4oA	664	12.70	c.37.1.19,c.37.1.19	32415,32416
1u24A	337	13.46	c.45.1.4	112968
1fpzA	212	16.59	c.45.1.1	59976
2hcrA	326	17.16		
2hxpA	155	22.18		
1yz4A	160	22.58		
1uqwA	509	25.34	c.94.1.1	99799
1ywfA	296	26.47	c.45.1.5	124144
1wrmA	165	26.67		
1oheA	348	27.48	c.45.1.1,c.45.1.1	87013,87014
2b4uA	335	28.70		
2j16A	182	30.33		
2jhfA	374	32.46	b.35.1.2,c.2.1.1	138314,138315
1zzwA	149	34.76		
1riiA	265	34.78	c.60.1.1	111807
1xdzA	240	35.01	c.66.1.20	115196
2gcgA	330	36.33		
1ekjA	221	37.32	c.53.2.1	33364
2hcmA	164	38.72		
2c46A	241	41.89		
1i9sA	210	43.23	c.45.1.1	62099
1vhrA	184	43.36	c.45.1.1	32651
1a2xA	159	44.07	a.39.1.5	17251
2r0bA	154	44.92		
1n8kA	374	46.05	b.35.1.2,c.2.1.1	80298,80299
2p4dA	172	47.02		
1f8fA	371	50.57	b.35.1.2,c.2.1.1	83246,83247
1d5rA	324	50.74	b.7.1.1,c.45.1.1	23181,32697
2esbA	188	51.25		
2vq3A	215	52.37		
2nt2A	145	53.30		
1rxdA	159	54.59	c.45.1.1	111959
1dpeA	507	55.58	c.94.1.1	35799
1qhfA	240	56.84	c.60.1.1	33960
2b4pA	334	57.69		
2f4dA	184	61.90		
1r26A	125	63.50	c.47.1.1	96847
1z6bA	154	68.30	d.38.1.6	124510
2z0jA	237	74.50		
1i1nA	226	75.26	c.66.1.7	71102
2fcaA	213	75.37	c.66.1.53	133262
1kpgA	287	77.12	c.66.1.18	68735
1yb5A	351	80.08	b.35.1.2,c.2.1.1	116601,116602
2gxaA	274	81.25		
1f08A	148	84.20	d.89.1.2	59564
1vhqA	232	86.60	c.23.16.2	100696
1ydgA	211	86.92	c.23.5.8	116614
1wlyA	333	87.17		
2icgA	160	88.30		
1qorA	327	88.39	b.35.1.2,c.2.1.1	24766,29782