# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 1.52e-14 1rhsA 296 5.33e-14 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 6.56e-14 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 1.05e-13 1qb0A 211 1.71e-12 c.46.1.1 32699 1yt8A 539 3.06e-12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 5.67e-12 c.46.1.2,c.46.1.2 107762,107763 1whbA 157 7.92e-12 c.46.1.4 114639 1gmxA 108 1.65e-11 c.46.1.3 65355 1t3kA 152 1.73e-11 c.46.1.1 106357 2fsxA 148 1.76e-11 2a2kA 175 2.29e-11 2j6pA 152 4.85e-11 1ymkA 175 1.29e-10 c.46.1.1 123699 2eg4A 230 1.55e-10 1okgA 373 1.89e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2gwfA 157 3.87e-10 c.46.1.4 135802 2oucA 142 3.44e-09 1wv9A 94 5.33e-08 2f46A 156 0.5883 2i6jA 161 3.551 1yn9A 169 7.463 1c4oA 664 8.512 c.37.1.19,c.37.1.19 32415,32416 1oheA 348 12.96 c.45.1.1,c.45.1.1 87013,87014 1fpzA 212 13.26 c.45.1.1 59976 1yz4A 160 14.81 2hxpA 155 15.07 1uqwA 509 15.45 c.94.1.1 99799 2hcrA 326 18.77 1zzwA 149 18.83 2hcmA 164 22.13 1ywfA 296 22.42 c.45.1.5 124144 1wrmA 165 23.67 1ekjA 221 23.83 c.53.2.1 33364 2r0bA 154 25.26 1riiA 265 25.45 c.60.1.1 111807 1vhrA 184 26.45 c.45.1.1 32651 1u24A 337 29.84 c.45.1.4 112968 2nt2A 145 30.22 2f4dA 184 31.02 1xdzA 240 31.47 c.66.1.20 115196 1yksA 440 32.19 c.37.1.14,c.37.1.14 123561,123562 1vi2A 300 33.73 c.2.1.7,c.58.1.5 100726,100727 2j16A 182 33.84 1bf6A 291 34.47 c.1.9.3 29065 2jhfA 374 35.21 b.35.1.2,c.2.1.1 138314,138315 2p4dA 172 37.05 2esbA 188 37.13 2c46A 241 39.77 2b4uA 335 40.25 1a2xA 159 40.55 a.39.1.5 17251 1n8kA 374 40.94 b.35.1.2,c.2.1.1 80298,80299 1qhfA 240 43.30 c.60.1.1 33960 1rxdA 159 43.54 c.45.1.1 111959 2e0tA 151 45.36 1yb5A 351 47.27 b.35.1.2,c.2.1.1 116601,116602 2z6rA 265 50.43 2imgA 151 50.56 1f8fA 371 52.03 b.35.1.2,c.2.1.1 83246,83247 1d5rA 324 54.89 b.7.1.1,c.45.1.1 23181,32697 1i9sA 210 55.35 c.45.1.1 62099 1ydgA 211 55.60 c.23.5.8 116614 1vl2A 421 55.69 c.26.2.1,d.210.1.1 108708,108709 2vq3A 215 60.82 1k92A 455 64.29 c.26.2.1,d.210.1.1 68325,68326 2gcgA 330 64.67 1r26A 125 67.36 c.47.1.1 96847 1zupA 315 67.74 c.55.3.11 125681 1z6bA 154 67.76 d.38.1.6 124510 2b4pA 334 69.20 2gxaA 274 69.92 2c5sA 413 69.95 c.26.2.6,d.308.1.1 129950,129951 1tfr 305 72.38 1p0fA 373 72.71 b.35.1.2,c.2.1.1 87642,87643 2az4A 429 73.33 d.157.1.10 127597 1oywA 523 73.60 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1o13A 136 74.15 c.55.5.1 80762 2v1xA 591 76.24 1i1nA 226 77.42 c.66.1.7 71102 2j4jA 226 80.23 1vj0A 380 82.01 b.35.1.2,c.2.1.1 100786,100787 1cjbA 231 83.13 c.61.1.1 34079 1dpeA 507 84.39 c.94.1.1 35799 3cwvA 369 85.97 2basA 431 86.24 c.1.33.1,d.110.6.2 128244,128245 1u3wA 374 87.38 b.35.1.2,c.2.1.1 113013,113014 2z0jA 237 87.58 2eihA 343 87.59 1e58A 249 87.61 c.60.1.1 59262 1h2eA 207 87.89 c.60.1.1 70857