# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 2.92e-14 1rhsA 296 9.85e-14 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 1.68e-13 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 4.07e-13 1uarA 285 4.02e-12 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 6.97e-12 c.46.1.1 32699 1yt8A 539 1.47e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1whbA 157 1.57e-11 c.46.1.4 114639 1t3kA 152 1.99e-11 c.46.1.1 106357 1gmxA 108 3.26e-11 c.46.1.3 65355 2fsxA 148 4.32e-11 2a2kA 175 7.31e-11 2j6pA 152 1.64e-10 1ymkA 175 3.91e-10 c.46.1.1 123699 2eg4A 230 4.63e-10 2gwfA 157 5.29e-10 c.46.1.4 135802 1okgA 373 6.47e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 1.04e-08 1wv9A 94 1.46e-07 2f46A 156 0.9467 2i6jA 161 4.106 1c4oA 664 8.540 c.37.1.19,c.37.1.19 32415,32416 1yn9A 169 9.244 2hcrA 326 13.93 1uqwA 509 15.83 c.94.1.1 99799 1fpzA 212 15.93 c.45.1.1 59976 2hxpA 155 19.47 1wrmA 165 20.77 1oheA 348 21.65 c.45.1.1,c.45.1.1 87013,87014 2jhfA 374 21.68 b.35.1.2,c.2.1.1 138314,138315 1yz4A 160 21.89 1n8kA 374 22.13 b.35.1.2,c.2.1.1 80298,80299 1f8fA 371 22.35 b.35.1.2,c.2.1.1 83246,83247 2b4uA 335 22.76 1u24A 337 23.10 c.45.1.4 112968 1ywfA 296 25.10 c.45.1.5 124144 1xdzA 240 25.53 c.66.1.20 115196 2b4pA 334 25.54 1zzwA 149 27.82 1vi2A 300 28.16 c.2.1.7,c.58.1.5 100726,100727 2r0bA 154 28.66 1yksA 440 29.51 c.37.1.14,c.37.1.14 123561,123562 1vhrA 184 32.07 c.45.1.1 32651 1riiA 265 34.92 c.60.1.1 111807 2j16A 182 35.21 1rxdA 159 35.44 c.45.1.1 111959 2hcmA 164 35.66 2f4dA 184 38.34 1p0fA 373 40.15 b.35.1.2,c.2.1.1 87642,87643 2nt2A 145 40.56 2gcgA 330 41.55 2gxaA 274 44.26 2c46A 241 44.75 2esbA 188 46.50 1dosA 358 49.12 c.1.10.2 29175 2p4dA 172 50.56 1yb5A 351 50.93 b.35.1.2,c.2.1.1 116601,116602 1u3wA 374 51.22 b.35.1.2,c.2.1.1 113013,113014 2az4A 429 56.01 d.157.1.10 127597 1qorA 327 56.13 b.35.1.2,c.2.1.1 24766,29782 2e0tA 151 56.66 1i9sA 210 56.86 c.45.1.1 62099 1r26A 125 59.76 c.47.1.1 96847 1ydgA 211 59.91 c.23.5.8 116614 1bf6A 291 62.62 c.1.9.3 29065 1a2xA 159 63.65 a.39.1.5 17251 2eihA 343 63.94 1qhfA 240 64.31 c.60.1.1 33960 2vq3A 215 66.74 1d5rA 324 67.57 b.7.1.1,c.45.1.1 23181,32697 1dpeA 507 67.74 c.94.1.1 35799 1k92A 455 68.37 c.26.2.1,d.210.1.1 68325,68326 2oemA 413 69.50 2q1sA 377 72.89 1yxyA 234 74.79 c.1.2.5 124203 1wlyA 333 74.99 1vl2A 421 76.24 c.26.2.1,d.210.1.1 108708,108709 1dkuA 317 77.00 c.61.1.2,c.61.1.2 34118,34119 1gpjA 404 78.08 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2imgA 151 78.46 2z0jA 237 79.62 2hk9A 275 80.41 2p4gA 270 81.77 2o4cA 380 82.32 2e7uA 424 85.51 2fcaA 213 86.16 c.66.1.53 133262 2eplX 627 86.73 1i1nA 226 86.89 c.66.1.7 71102 1oywA 523 89.39 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762