# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhs	296	1.69e-12		
1rhsA	296	3.85e-12	c.46.1.2,c.46.1.2	32703,32704
2hhgA	139	4.10e-12		
1e0cA	271	5.15e-12	c.46.1.2,c.46.1.2	32717,32718
1qb0A	211	3.02e-11	c.46.1.1	32699
1uarA	285	4.92e-11	c.46.1.2,c.46.1.2	107762,107763
1whbA	157	6.18e-11	c.46.1.4	114639
2a2kA	175	2.95e-10		
2fsxA	148	3.04e-10		
1gmxA	108	5.92e-10	c.46.1.3	65355
1t3kA	152	5.96e-10	c.46.1.1	106357
2j6pA	152	1.90e-09		
1ymkA	175	3.22e-09	c.46.1.1	123699
2gwfA	157	3.40e-09	c.46.1.4	135802
1yt8A	539	8.87e-09	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1okgA	373	1.06e-08	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	2.71e-08		
2oucA	142	5.10e-08		
1wv9A	94	6.71e-06		
2f46A	156	2.111		
2hcrA	326	3.883		
1oheA	348	12.74	c.45.1.1,c.45.1.1	87013,87014
1u24A	337	13.95	c.45.1.4	112968
1u9yA	284	15.45	c.61.1.2,c.61.1.2	119655,119656
1yn9A	169	15.77		
1dkuA	317	21.45	c.61.1.2,c.61.1.2	34118,34119
1i9sA	210	21.50	c.45.1.1	62099
2douA	376	23.08		
1fpzA	212	23.42	c.45.1.1	59976
2gcgA	330	24.46		
1ecfA	504	32.12	c.61.1.1,d.153.1.1	34053,41820
1d5rA	324	34.01	b.7.1.1,c.45.1.1	23181,32697
1kpgA	287	36.07	c.66.1.18	68735
2az4A	429	37.43	d.157.1.10	127597
2i6jA	161	39.60		
2c46A	241	39.95		
1cjbA	231	50.51	c.61.1.1	34079
2fafA	608	51.60		
1musA	477	52.63	c.55.3.4	79494
2v8oA	444	55.89		
1uwcA	261	58.75	c.69.1.17	100101
3tglA	269	59.21	c.69.1.17	34733
2vq3A	215	61.63		
2imgA	151	62.48		
2r0bA	154	62.87		
2hxpA	155	65.10		
1j5xA	342	68.61	c.80.1.1	71591
2esbA	188	70.02		
1ydgA	211	70.72	c.23.5.8	116614
2hcmA	164	71.58		
1vhrA	184	75.30	c.45.1.1	32651
1qhfA	240	76.52	c.60.1.1	33960
1tib	269	76.87		
2gb3A	409	78.50	c.67.1.1	134903
2gruA	368	79.12		
2dbqA	334	80.35		
1c9kA	180	84.91	c.37.1.11	32363
2f4dA	184	88.01		
1j0dA	341	89.99	c.79.1.1	83902