# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhs	296	1.25e-11		
1rhsA	296	2.92e-11	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	8.65e-11	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	1.12e-10		
1uarA	285	2.77e-10	c.46.1.2,c.46.1.2	107762,107763
1qb0A	211	5.30e-10	c.46.1.1	32699
1whbA	157	7.02e-10	c.46.1.4	114639
1t3kA	152	3.07e-09	c.46.1.1	106357
1yt8A	539	3.20e-09	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2a2kA	175	4.92e-09		
2j6pA	152	5.08e-09		
1gmxA	108	7.14e-09	c.46.1.3	65355
2fsxA	148	8.31e-09		
2eg4A	230	2.05e-08		
2gwfA	157	2.67e-08	c.46.1.4	135802
1ymkA	175	3.18e-08	c.46.1.1	123699
1okgA	373	3.39e-08	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2oucA	142	3.83e-07		
1wv9A	94	3.54e-06		
2f46A	156	0.9096		
2i6jA	161	6.031		
1yn9A	169	8.260		
1oheA	348	8.559	c.45.1.1,c.45.1.1	87013,87014
1fpzA	212	10.89	c.45.1.1	59976
1rxdA	159	13.60	c.45.1.1	111959
2gcgA	330	17.02		
1d5rA	324	17.51	b.7.1.1,c.45.1.1	23181,32697
1musA	477	20.51	c.55.3.4	79494
2hxpA	155	23.48		
2b4uA	335	24.54		
2r0bA	154	26.15		
2hcrA	326	27.35		
1zzwA	149	30.86		
1yhtA	367	31.37	c.1.8.6	123213
2dbqA	334	38.94		
2hcmA	164	40.19		
1u24A	337	42.51	c.45.1.4	112968
1wrmA	165	43.99		
1tib	269	45.25		
1i9sA	210	46.46	c.45.1.1	62099
1vhrA	184	48.13	c.45.1.1	32651
2c46A	241	48.16		
2j16A	182	48.89		
2nt2A	145	49.89		
2imgA	151	50.49		
1lv7A	257	51.13	c.37.1.20	78232
2esbA	188	52.29		
2p4dA	172	56.12		
1yz4A	160	57.46		
1cexA	214	60.49	c.69.1.30	31285
2e85A	159	61.11		
2fh7A	595	61.28		
1yxyA	234	65.87	c.1.2.5	124203
1qnrA	344	66.97	c.1.8.3	28834
1ydgA	211	69.87	c.23.5.8	116614
1reqB	637	73.37	c.1.19.1,c.23.6.1	29621,31248
2f4dA	184	73.85		
2b4pA	334	75.82		
3bchA	253	77.84		
2h4vA	320	78.48		
1r26A	125	78.84	c.47.1.1	96847
1dkuA	317	78.97	c.61.1.2,c.61.1.2	34118,34119
1ir6A	424	79.85	c.107.1.2	71342
2h4aA	325	82.48		
2hmaA	376	82.81		
1bf6A	291	83.87	c.1.9.3	29065
1z15A	344	85.07		
1xcbA	211	85.09	a.4.5.38,c.2.1.12	109552,109553
2az4A	429	87.77	d.157.1.10	127597
1yirA	408	89.34	c.1.17.2,d.41.2.2	123330,123331
1qorA	327	89.42	b.35.1.2,c.2.1.1	24766,29782
2czqA	205	89.49