# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 2.83e-11 2hhgA 139 5.16e-11 1rhsA 296 6.77e-11 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 2.61e-10 c.46.1.2,c.46.1.2 32717,32718 1uarA 285 8.50e-10 c.46.1.2,c.46.1.2 107762,107763 1gmxA 108 1.12e-09 c.46.1.3 65355 1yt8A 539 9.23e-09 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2a2kA 175 9.24e-09 1qb0A 211 9.90e-09 c.46.1.1 32699 1whbA 157 3.09e-08 c.46.1.4 114639 2gwfA 157 6.71e-08 c.46.1.4 135802 1ymkA 175 6.79e-08 c.46.1.1 123699 2j6pA 152 1.75e-07 2eg4A 230 3.02e-07 2fsxA 148 6.01e-07 1t3kA 152 2.52e-06 c.46.1.1 106357 2oucA 142 6.63e-06 1okgA 373 1.29e-05 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 9.43e-05 2e6mA 208 0.7820 2fbyA 205 1.349 2f46A 156 1.942 1i9sA 210 2.813 c.45.1.1 62099 2c46A 241 6.880 2o7iA 592 7.811 2bl0B 145 8.675 1w5qA 337 10.50 2v1xA 591 10.91 2c71A 216 11.15 c.6.2.3 130017 2dbqA 334 11.52 1dpeA 507 12.21 c.94.1.1 35799 1fmjA 351 13.00 c.37.1.5 59879 1im5A 180 13.20 c.33.1.3 66211 2qahA 303 13.29 1ygyA 529 13.45 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1xrsB 262 14.00 c.23.6.1,d.230.4.1 115884,115885 1pswA 348 14.13 c.87.1.7 88287 1zu0A 529 15.71 2yyvA 227 17.90 2d73A 738 20.45 1yt3A 375 20.64 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 1gdhA 320 22.59 c.2.1.4,c.23.12.1 30095,31355 1y0pA 571 22.80 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2cc0A 195 23.44 c.6.2.3 130209 2bllA 345 24.34 c.2.1.2 128733 1u24A 337 24.40 c.45.1.4 112968 1l6sA 323 24.48 c.1.10.3 73627 1sc6A 404 25.92 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1kq3A 376 26.48 e.22.1.2 68790 1oneA 436 26.81 c.1.11.1,d.54.1.1 29200,38844 2b4uA 335 26.89 1fpzA 212 27.13 c.45.1.1 59976 1m45A 148 27.16 a.39.1.5 78598 1j2rA 199 27.20 c.33.1.3 90788 1xocA 520 27.44 c.94.1.1 122201 2grvA 621 27.67 1t6t1 118 28.81 1p2hA 571 28.95 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2d5wA 603 29.21 3cvjA 243 29.35 1yn9A 169 29.61 2p5tB 253 30.04 1qo8A 566 30.63 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2a5hA 416 31.24 2o8nA 265 31.51 2gcgA 330 31.80 2r3bA 310 32.42 2h0rA 216 32.73 2drvA 200 33.24 2d4qA 257 34.31 1oheA 348 35.01 c.45.1.1,c.45.1.1 87013,87014 1tljA 213 36.03 d.282.1.1 107126 1ybdA 239 36.73 c.73.1.3 122884 2z1dA 372 37.00 2qg3A 208 37.49 2bo1A 101 38.29 1r6dA 337 39.00 c.2.1.2 97148 1z7bA 358 39.59 c.2.1.2 124599 2e55A 208 39.67 2i7aA 174 40.25 2vq3A 215 40.42 2atmA 331 40.51 1bd3A 243 43.20 c.61.1.1 34098 2j9iA 421 43.40 2g76A 335 43.72 2pi1A 334 45.74 3cnbA 143 46.07 1ta9A 450 46.78 1edzA 320 46.88 c.2.1.7,c.58.1.2 30287,33935 1vr0A 247 47.33 c.148.1.1 120428 1vr5A 547 47.38 c.94.1.1 120437 1pe1A 267 47.81 c.1.10.4 94591 1u9yA 284 48.14 c.61.1.2,c.61.1.2 119655,119656 2q4eA 362 48.86 2dy0A 190 49.94 1xcbA 211 52.35 a.4.5.38,c.2.1.12 109552,109553 1qb7A 236 53.42 c.61.1.1 34087 1hdoA 206 55.61 c.2.1.2 60965 1jbeA 128 55.92 c.23.1.1 62845 2nooA 502 56.09 1l5jA 865 56.93 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1o60A 292 58.22 c.1.10.4 92532 2ht9A 146 59.67 1yacA 208 60.68 c.33.1.3 31757 3bi1A 709 61.11 2or4A 709 61.23 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 2al1A 436 61.97 c.1.11.1,d.54.1.1 126949,126950 1gnlA 544 62.04 e.26.1.1 70287 1h6kA 757 63.53 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 2hxpA 155 65.65 2pcqA 283 67.94 1mx3A 347 68.36 c.2.1.4,c.23.12.1 79638,79639 2fcaA 213 68.98 c.66.1.53 133262 2al2A 436 69.61 c.1.11.1,d.54.1.1 126953,126954 2cuyA 305 70.11 2it2A 200 71.60 2kfnA 605 71.83 c.55.3.5,e.8.1.1 33682,42975 1lc0A 294 72.39 c.2.1.3,d.81.1.4 73823,73824 2ootA 709 73.67 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 2nrrA 159 73.80 2b82A 211 74.62 c.108.1.12 128057 2dvzA 314 75.03 2akzA 439 75.23 c.1.11.1,d.54.1.1 126944,126945 2nwrA 267 75.65 2uz0A 263 76.47 1jetA 517 76.87 c.94.1.1 35718 1jubA 311 77.65 c.1.4.1 90908 1d5rA 324 77.99 b.7.1.1,c.45.1.1 23181,32697 1mxgA 435 78.28 b.71.1.1,c.1.8.1 85193,85194 1pjr 724 78.30 1f8rA 498 78.90 c.3.1.2,d.16.1.5 30410,37974 1v9mA 323 79.79 f.40.1.1 100543 2pceA 386 80.32 2a67A 167 80.66 1b0aA 288 81.00 c.2.1.7,c.58.1.2 30286,33934 1wfxA 186 81.13 d.166.1.5 114596 1v7zA 260 83.30 c.125.1.1 100488 1zlqA 502 83.59 c.94.1.1 125253 2z0jA 237 83.93 2hqsC 118 83.99 d.79.7.1 136666 1dceB 331 84.45 a.102.4.3 18872 2yxoA 267 85.94 2brxA 244 86.21 c.73.1.3 129028 1wwkA 307 86.37 1pjrA 724 86.57 c.37.1.19,c.37.1.19 32391,32392 3ce9A 354 88.45 1w41A 101 88.51 1nf9A 207 88.67 c.33.1.3 85631 1a0p 290 89.05 2ahqA 76 89.21 2h8lA 252 89.28