# List of top-scoring protein chains for T0411.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1uarA	285	3.00e-10	c.46.1.2,c.46.1.2	107762,107763
1urhA	280	1.24e-09	c.46.1.2,c.46.1.2	99829,99830
1rhsA	296	1.87e-09	c.46.1.2,c.46.1.2	32703,32704
1dp2A	293	1.89e-09	c.46.1.2,c.46.1.2	32705,32706
1rhdA	293	1.92e-09	c.46.1.2,c.46.1.2	32715,32716
1e0cA	271	8.71e-09	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	3.88e-08		
2eg4A	230	1.82e-07		
1tq1A	129	2.36e-07	c.46.1.3	107198
1gmxA	108	4.00e-07	c.46.1.3	65355
1qxnA	137	4.17e-07	c.46.1.3	96537
1yt8A	539	5.66e-05	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2k0zA	110	5.85e-05		
1okgA	373	0.000331	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1c25A	161	0.000470	c.46.1.1	32698
2ifdA	175	0.000556		
1ymkA	175	0.000635	c.46.1.1	123699
1cwtA	178	0.000636	c.46.1.1	32702
1qb0A	211	0.000678	c.46.1.1	32699
2a2kA	175	0.000737		
2ifvA	175	0.001070		
2fsxA	148	0.001851		
1hzmA	154	0.007758	c.46.1.1	65975
1wv9A	94	0.01050		
2j6pA	152	0.03088		
1t3kA	152	0.04840	c.46.1.1	106357
2oucA	142	0.1948		
1veeA	134	0.9793		
1wqaA	455	9.136		
1i2oA	316	14.26	c.1.10.1	61574
2gwfA	157	16.48	c.46.1.4	135802
1whbA	157	21.47	c.46.1.4	114639
1x31B	404	21.52		
2fdrA	229	24.91	c.108.1.6	133319
3brqA	296	37.91		
2gagB	405	42.78		
2dxnA	274	48.78		
2j13A	247	50.24	c.6.2.3	137934
3busA	273	53.64		
1vi6A	208	63.25	c.23.15.1	100736
2yxeA	215	66.08		
1ny1A	240	69.72	c.6.2.3	86395
1w1b1	257	72.78		
1w17A	263	73.00	c.6.2.3	120573
2eihA	343	76.16