# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 1.01e-12 1rhsA 296 1.97e-12 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 1.97e-12 c.46.1.2,c.46.1.2 32717,32718 1rhs 296 4.35e-12 1yt8A 539 1.65e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 3.28e-11 c.46.1.3 65355 1uarA 285 4.67e-11 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 1.11e-10 c.46.1.1 32699 2fsxA 148 1.44e-10 1t3kA 152 1.62e-10 c.46.1.1 106357 1c25 161 1.72e-10 1ymkA 175 6.57e-10 c.46.1.1 123699 1okgA 373 6.65e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1whbA 157 6.71e-10 c.46.1.4 114639 2a2kA 175 7.25e-10 2eg4A 230 1.21e-09 2j6pA 152 4.12e-09 2gwfA 157 1.31e-08 c.46.1.4 135802 1wv9A 94 3.65e-08 2oucA 142 8.61e-08 2f46A 156 3.497 2c3zA 222 5.496 2c5sA 413 5.931 c.26.2.6,d.308.1.1 129950,129951 1yn9A 169 5.937 1yz4A 160 9.666 1x24A 180 10.53 2cybA 323 14.39 1ywfA 296 15.94 c.45.1.5 124144 2dbqA 334 16.39 2b4pA 334 17.22 2i6jA 161 18.16 1zclA 180 18.64 2hxpA 155 19.83 1wrmA 165 20.48 1rxdA 159 22.49 c.45.1.1 111959 1tf5A 844 22.55 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1eudB 396 22.71 c.23.4.1,d.142.1.4 31150,41571 2b4uA 335 23.34 1vl2A 421 23.67 c.26.2.1,d.210.1.1 108708,108709 1vhoA 346 24.48 b.49.3.1,c.56.5.4 100694,100695 2r0bA 154 25.01 1i9sA 210 25.10 c.45.1.1 62099 2a9fA 398 26.80 1oywA 523 27.57 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2c46A 241 28.03 1i9gA 280 29.45 c.66.1.13 62090 1y0eA 223 31.90 c.1.2.5 116297 2p4dA 172 32.19 2nu8B 388 33.91 2hmaA 376 35.83 3b5vA 248 35.97 2cftA 298 36.68 1yloA 348 36.85 b.49.3.1,c.56.5.4 123659,123660 2p4gA 270 38.16 2imgA 151 39.67 2d13A 227 39.92 c.26.2.1 131121 2nt2A 145 41.56 1k92A 455 42.72 c.26.2.1,d.210.1.1 68325,68326 1psdA 409 43.33 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1npyA 271 47.52 c.2.1.7,c.58.1.5 85995,85996 1t5iA 172 48.63 c.37.1.19 106450 2q1sA 377 49.09 1qorA 327 49.52 b.35.1.2,c.2.1.1 24766,29782 2j16A 182 52.21 1zckA 154 53.36 2e18A 257 54.79 1d5rA 324 55.45 b.7.1.1,c.45.1.1 23181,32697 2z0jA 237 55.46 2fshA 853 55.52 2dm6A 333 57.00 b.35.1.2,c.2.1.1 131567,131568 1igs 248 57.47 1vhrA 184 57.50 c.45.1.1 32651 2fh7A 595 58.20 1yb5A 351 59.77 b.35.1.2,c.2.1.1 116601,116602 2h1rA 299 59.93 3brqA 296 60.43 2yxeA 215 62.02 1ep3A 311 62.13 c.1.4.1 28597 1i2cA 404 62.76 c.2.1.2 83666 1xcbA 211 64.48 a.4.5.38,c.2.1.12 109552,109553 2b69A 343 64.81 c.2.1.2 127974 2e0tA 151 64.97 2dekA 265 67.06 c.90.1.1 131430 1zzwA 149 67.44 1or8A 340 72.26 c.66.1.6 93451 1f8fA 371 72.82 b.35.1.2,c.2.1.1 83246,83247 2f4dA 184 72.88 2hcmA 164 73.05 2eihA 343 73.92 2pt7A 330 74.27 2esbA 188 75.90 4ts1A 319 75.94 c.26.1.1 31565 2a0nA 265 77.80 c.1.2.1 125961 2c5aA 379 78.36 c.2.1.2 129894 1wlyA 333 80.22 1xfoA 357 80.36 b.49.3.1,c.56.5.4 115265,115266 1sur 215 80.41 1dxy 333 81.90 1oheA 348 82.16 c.45.1.1,c.45.1.1 87013,87014 1im8A 244 83.35 c.66.1.14 66212 1p15A 253 84.05 c.45.1.2 93894 1qo2A 241 85.11 c.1.2.1 28533 1jvbA 347 86.34 b.35.1.2,c.2.1.1 77181,77182 1ufyA 122 87.11 d.79.1.2 88489 1tlfA 301 87.19 c.93.1.1 35687