# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e0cA	271	2.13e-12	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	2.43e-12	c.46.1.2,c.46.1.2	32703,32704
2hhgA	139	2.48e-12		
1rhs	296	3.85e-12		
1yt8A	539	3.28e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1uarA	285	5.95e-11	c.46.1.2,c.46.1.2	107762,107763
1gmxA	108	6.75e-11	c.46.1.3	65355
1qb0A	211	1.48e-10	c.46.1.1	32699
2fsxA	148	1.73e-10		
1c25	161	3.64e-10		
1t3kA	152	3.83e-10	c.46.1.1	106357
1ymkA	175	7.57e-10	c.46.1.1	123699
1okgA	373	7.80e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1whbA	157	7.88e-10	c.46.1.4	114639
2a2kA	175	9.07e-10		
2eg4A	230	1.19e-09		
2j6pA	152	5.93e-09		
2gwfA	157	2.02e-08	c.46.1.4	135802
1wv9A	94	5.34e-08		
2oucA	142	8.65e-08		
2f46A	156	3.326		
1yn9A	169	3.351		
1zclA	180	5.502		
1yz4A	160	6.292		
2c3zA	222	7.114		
1x24A	180	7.635		
2c5sA	413	9.189	c.26.2.6,d.308.1.1	129950,129951
1ywfA	296	10.14	c.45.1.5	124144
2dbqA	334	13.97		
1wrmA	165	15.79		
1rxdA	159	15.84	c.45.1.1	111959
2c46A	241	16.31		
2b4pA	334	16.60		
2hxpA	155	16.61		
2r0bA	154	16.94		
2i6jA	161	19.29		
2b4uA	335	19.79		
1i9sA	210	20.03	c.45.1.1	62099
2imgA	151	21.45		
1yloA	348	22.09	b.49.3.1,c.56.5.4	123659,123660
2p4dA	172	22.20		
1f8fA	371	22.91	b.35.1.2,c.2.1.1	83246,83247
1vhoA	346	24.73	b.49.3.1,c.56.5.4	100694,100695
2a9fA	398	25.18		
2nt2A	145	25.46		
2j16A	182	27.26		
2cybA	323	27.54		
1tf5A	844	27.60	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	106834,106835,106836,106837
1xfoA	357	28.88	b.49.3.1,c.56.5.4	115265,115266
1zckA	154	32.70		
1vl2A	421	34.27	c.26.2.1,d.210.1.1	108708,108709
2d13A	227	34.55	c.26.2.1	131121
2fh7A	595	40.35		
1i9gA	280	40.70	c.66.1.13	62090
2hmaA	376	40.92		
2fshA	853	40.97		
2p4gA	270	41.10		
1d5rA	324	43.36	b.7.1.1,c.45.1.1	23181,32697
1fpzA	212	43.41	c.45.1.1	59976
2esbA	188	44.93		
2e18A	257	46.56		
1k92A	455	46.68	c.26.2.1,d.210.1.1	68325,68326
2q1sA	377	47.50		
2f4dA	184	47.96		
1zzwA	149	48.03		
1y0yA	353	48.11	b.49.3.1,c.56.5.4	122514,122515
1oheA	348	50.77	c.45.1.1,c.45.1.1	87013,87014
1psdA	409	52.21	c.2.1.4,c.23.12.1,d.58.18.1	30097,31357,39354
2h1rA	299	52.77		
1t5iA	172	53.14	c.37.1.19	106450
1yb5A	351	53.69	b.35.1.2,c.2.1.1	116601,116602
1vhrA	184	54.57	c.45.1.1	32651
1xcbA	211	55.21	a.4.5.38,c.2.1.12	109552,109553
1eudB	396	55.22	c.23.4.1,d.142.1.4	31150,41571
2nu8B	388	55.48		
1jvbA	347	55.87	b.35.1.2,c.2.1.1	77181,77182
2cftA	298	56.16		
3b5vA	248	59.19		
1jlnA	297	60.20	c.45.1.2	63172
1igs	248	60.39		
1qorA	327	61.48	b.35.1.2,c.2.1.1	24766,29782
2pt7A	330	61.62		
2b69A	343	61.77	c.2.1.2	127974
2z0jA	237	61.99		
1y0eA	223	62.03	c.1.2.5	116297
2hcmA	164	63.35		
1p15A	253	67.23	c.45.1.2	93894
1l3iA	192	68.84	c.66.1.22	77676
2iw1A	374	69.11	c.87.1.8	137738
1i2cA	404	71.28	c.2.1.2	83666
2yxeA	215	74.24		
1oywA	523	76.91	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
1ep3A	311	78.69	c.1.4.1	28597
2eihA	343	80.32		
2dm6A	333	80.40	b.35.1.2,c.2.1.1	131567,131568
2pg3A	232	80.61		
2jg2A	422	81.05		
1npyA	271	81.83	c.2.1.7,c.58.1.5	85995,85996
1wchA	315	84.37	c.45.1.2	114508
1sur	215	85.57		
1r26A	125	88.83	c.47.1.1	96847
1y56A	493	89.05