# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhsA 296 2.04e-15 c.46.1.2,c.46.1.2 32703,32704 2hhgA 139 2.08e-15 1e0cA 271 4.17e-15 c.46.1.2,c.46.1.2 32717,32718 1rhs 296 4.17e-15 1yt8A 539 7.77e-14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 1.99e-13 c.46.1.3 65355 1uarA 285 3.19e-13 c.46.1.2,c.46.1.2 107762,107763 2fsxA 148 1.12e-12 1qb0A 211 1.59e-12 c.46.1.1 32699 1c25 161 2.90e-12 1okgA 373 3.88e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 7.71e-12 1ymkA 175 8.44e-12 c.46.1.1 123699 1t3kA 152 8.51e-12 c.46.1.1 106357 2a2kA 175 1.02e-11 1whbA 157 2.49e-11 c.46.1.4 114639 2j6pA 152 1.24e-10 1wv9A 94 4.20e-10 2gwfA 157 7.65e-10 c.46.1.4 135802 2oucA 142 1.69e-09 1yn9A 169 1.751 2c3zA 222 1.862 2f46A 156 2.651 3b5vA 248 2.943 1igs 248 4.212 1tf5A 844 5.090 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1x24A 180 5.179 1oywA 523 5.307 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1y0eA 223 5.365 c.1.2.5 116297 2c5sA 413 6.420 c.26.2.6,d.308.1.1 129950,129951 1a53 247 7.791 2imgA 151 7.793 1yz4A 160 8.540 2c46A 241 8.715 1zclA 180 8.792 1npyA 271 11.45 c.2.1.7,c.58.1.5 85995,85996 1ywfA 296 13.28 c.45.1.5 124144 1i9sA 210 13.51 c.45.1.1 62099 2r0bA 154 13.82 2p4gA 270 15.62 2i6jA 161 16.30 2cybA 323 16.78 1rxdA 159 17.08 c.45.1.1 111959 2cftA 298 17.35 2a9fA 398 17.52 1eudB 396 18.03 c.23.4.1,d.142.1.4 31150,41571 1a53A 247 18.16 c.1.2.4 28564 2b4uA 335 19.57 2nu8B 388 19.88 1t5iA 172 19.95 c.37.1.19 106450 2nt2A 145 21.74 1vhrA 184 22.04 c.45.1.1 32651 1r3sA 367 24.59 c.1.22.1 96963 2dekA 265 24.67 c.90.1.1 131430 2fh7A 595 26.00 1qorA 327 26.71 b.35.1.2,c.2.1.1 24766,29782 2q1sA 377 27.11 2bmaA 470 28.54 1vl2A 421 30.52 c.26.2.1,d.210.1.1 108708,108709 1pwhA 327 33.36 c.79.1.1 95224 1f8fA 371 33.37 b.35.1.2,c.2.1.1 83246,83247 2e0tA 151 33.99 1ep3A 311 34.08 c.1.4.1 28597 1jlnA 297 35.46 c.45.1.2 63172 1wrmA 165 35.83 1oheA 348 36.01 c.45.1.1,c.45.1.1 87013,87014 1i9gA 280 36.04 c.66.1.13 62090 2df8A 325 36.64 2f4dA 184 37.19 1wlyA 333 37.38 2hxpA 155 39.80 1zckA 154 40.20 3cwvA 369 40.62 1y56A 493 41.13 1thfD 253 41.82 c.1.2.1 28535 1i2cA 404 42.44 c.2.1.2 83666 2a0nA 265 42.72 c.1.2.1 125961 1zzwA 149 44.59 2esbA 188 44.90 1yloA 348 45.65 b.49.3.1,c.56.5.4 123659,123660 2bo1A 101 45.82 2b4pA 334 46.46 2hmaA 376 46.58 1gpjA 404 46.81 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1a8y 367 48.51 2dbqA 334 48.52 2e5fA 325 48.77 2p4dA 172 50.51 1k92A 455 50.57 c.26.2.1,d.210.1.1 68325,68326 1vhoA 346 50.65 b.49.3.1,c.56.5.4 100694,100695 2hcmA 164 51.30 2d13A 227 51.63 c.26.2.1 131121 1aj2 282 52.28 2iw1A 374 54.53 c.87.1.8 137738 5nulA 138 54.64 c.23.5.1 31191 1h5yA 253 54.80 c.1.2.1 65638 2j16A 182 54.98 1v7zA 260 55.29 c.125.1.1 100488 2b69A 343 55.63 c.2.1.2 127974 1tzjA 338 57.95 c.79.1.1 112868 1qo2A 241 57.99 c.1.2.1 28533 1p77A 272 61.17 c.2.1.7,c.58.1.5 94214,94215 1yb5A 351 61.35 b.35.1.2,c.2.1.1 116601,116602 1oa8A 133 62.24 b.145.1.1 92698 2pt7A 330 62.32 2qdxA 257 63.48 1t8sA 484 63.99 c.56.2.1 106679 2eo5A 419 64.06 2e18A 257 64.89 2gz1A 366 66.00 c.2.1.3,d.81.1.1 135887,135888 1fpzA 212 67.71 c.45.1.1 59976 2eihA 343 68.09 2dm6A 333 69.94 b.35.1.2,c.2.1.1 131567,131568 1hrdA 449 70.96 c.2.1.7,c.58.1.1 30219,33867 2ohxA 374 72.11 b.35.1.2,c.2.1.1 24669,29685 7taa 478 72.81 2oycA 306 74.07 1xfoA 357 74.58 b.49.3.1,c.56.5.4 115265,115266 2h1rA 299 75.21 1p15A 253 75.22 c.45.1.2 93894 1xcbA 211 76.23 a.4.5.38,c.2.1.12 109552,109553 2cb0A 333 78.03 2qr6A 393 78.50 1d4xA 375 81.56 c.55.1.1,c.55.1.1 59107,59108 2jg2A 422 82.05 2hrzA 342 82.69 2ptzA 432 82.93 1uiuA 502 83.15 c.94.1.1 99434 1vj0A 380 83.15 b.35.1.2,c.2.1.1 100786,100787 1vi2A 300 85.60 c.2.1.7,c.58.1.5 100726,100727 4ts1A 319 86.14 c.26.1.1 31565 1nytA 271 88.14 c.2.1.7,c.58.1.5 86417,86418