# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	6.13e-14		
1rhsA	296	1.81e-13	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	2.36e-13		
1e0cA	271	2.42e-13	c.46.1.2,c.46.1.2	32717,32718
1yt8A	539	2.03e-12	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1gmxA	108	2.16e-12	c.46.1.3	65355
2fsxA	148	9.50e-12		
1uarA	285	1.76e-11	c.46.1.2,c.46.1.2	107762,107763
1qb0A	211	1.82e-11	c.46.1.1	32699
1c25	161	2.34e-11		
1ymkA	175	4.55e-11	c.46.1.1	123699
1t3kA	152	6.46e-11	c.46.1.1	106357
1whbA	157	6.77e-11	c.46.1.4	114639
2a2kA	175	7.34e-11		
1okgA	373	9.11e-11	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	3.37e-10		
2j6pA	152	2.29e-09		
2gwfA	157	4.15e-09	c.46.1.4	135802
1wv9A	94	9.96e-09		
2oucA	142	2.15e-08		
1yn9A	169	7.599		
2f46A	156	8.529		
1yz4A	160	11.36		
2dbqA	334	12.56		
2c5sA	413	12.65	c.26.2.6,d.308.1.1	129950,129951
1x24A	180	14.99		
1ywfA	296	15.08	c.45.1.5	124144
1eudB	396	15.78	c.23.4.1,d.142.1.4	31150,41571
1zclA	180	16.64		
2c3zA	222	17.83		
2p4gA	270	18.15		
2cybA	323	21.25		
1rxdA	159	24.24	c.45.1.1	111959
2b4uA	335	28.25		
1npyA	271	28.41	c.2.1.7,c.58.1.5	85995,85996
1i9sA	210	31.02	c.45.1.1	62099
2cftA	298	32.27		
1wrmA	165	32.86		
1vhrA	184	33.72	c.45.1.1	32651
1tf5A	844	34.28	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	106834,106835,106836,106837
2c46A	241	36.46		
1yloA	348	36.89	b.49.3.1,c.56.5.4	123659,123660
1ep3A	311	38.12	c.1.4.1	28597
1y56A	493	38.95		
2r0bA	154	40.42		
1vhoA	346	41.73	b.49.3.1,c.56.5.4	100694,100695
2i6jA	161	42.18		
1oywA	523	43.34	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2p4dA	172	44.16		
1y0eA	223	46.18	c.1.2.5	116297
2hxpA	155	49.65		
2b4pA	334	53.27		
2nu8B	388	54.83		
1pwhA	327	58.29	c.79.1.1	95224
1i2cA	404	59.94	c.2.1.2	83666
1zckA	154	60.04		
5nulA	138	61.62	c.23.5.1	31191
2d13A	227	63.69	c.26.2.1	131121
1f8fA	371	65.09	b.35.1.2,c.2.1.1	83246,83247
2q1sA	377	65.34		
1y0yA	353	65.42	b.49.3.1,c.56.5.4	122514,122515
1zzwA	149	67.96		
2df8A	325	68.74		
2imgA	151	69.10		
1igs	248	70.42		
1i0dA	332	70.63	c.1.9.3	61487
2fh7A	595	73.50		
1tzjA	338	74.06	c.79.1.1	112868
1d5rA	324	74.96	b.7.1.1,c.45.1.1	23181,32697
2e18A	257	77.50		
2bo1A	101	78.36		
2e5fA	325	79.66		
2j16A	182	80.13		
1qorA	327	81.01	b.35.1.2,c.2.1.1	24766,29782
1sur	215	82.04		
1i9gA	280	82.05	c.66.1.13	62090
1xfoA	357	83.62	b.49.3.1,c.56.5.4	115265,115266
1fpzA	212	85.59	c.45.1.1	59976
2a9fA	398	85.87		
1fc6A	388	86.45	b.36.1.3,c.14.1.2	64738,64739
2dekA	265	89.76	c.90.1.1	131430