# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	2.41e-13		
1rhsA	296	6.90e-13	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	8.79e-13	c.46.1.2,c.46.1.2	32717,32718
1rhs	296	9.23e-13		
1yt8A	539	6.63e-12	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1gmxA	108	9.24e-12	c.46.1.3	65355
2fsxA	148	3.51e-11		
1uarA	285	3.89e-11	c.46.1.2,c.46.1.2	107762,107763
1qb0A	211	5.83e-11	c.46.1.1	32699
1c25	161	8.36e-11		
1ymkA	175	1.27e-10	c.46.1.1	123699
1whbA	157	1.80e-10	c.46.1.4	114639
1t3kA	152	1.81e-10	c.46.1.1	106357
2a2kA	175	2.17e-10		
1okgA	373	3.38e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	9.30e-10		
2j6pA	152	5.72e-09		
2gwfA	157	8.69e-09	c.46.1.4	135802
1wv9A	94	1.98e-08		
2oucA	142	5.24e-08		
1yn9A	169	7.357		
2f46A	156	7.365		
1yz4A	160	9.616		
2c5sA	413	11.13	c.26.2.6,d.308.1.1	129950,129951
1ywfA	296	13.37	c.45.1.5	124144
2dbqA	334	14.60		
1zclA	180	15.59		
1x24A	180	15.82		
1eudB	396	19.67	c.23.4.1,d.142.1.4	31150,41571
2cybA	323	20.02		
1rxdA	159	20.86	c.45.1.1	111959
2p4gA	270	22.15		
2c3zA	222	25.74		
1ep3A	311	25.77	c.1.4.1	28597
1wrmA	165	26.89		
1i9sA	210	28.02	c.45.1.1	62099
2b4uA	335	29.47		
1npyA	271	30.02	c.2.1.7,c.58.1.5	85995,85996
1vhrA	184	30.99	c.45.1.1	32651
2cftA	298	31.79		
1vhoA	346	33.98	b.49.3.1,c.56.5.4	100694,100695
2r0bA	154	34.08		
1tf5A	844	37.07	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	106834,106835,106836,106837
2c46A	241	37.83		
1yloA	348	37.99	b.49.3.1,c.56.5.4	123659,123660
2p4dA	172	39.21		
2hxpA	155	39.89		
2i6jA	161	40.56		
2b4pA	334	42.57		
1d5rA	324	43.58	b.7.1.1,c.45.1.1	23181,32697
1y56A	493	43.76		
1y0eA	223	45.10	c.1.2.5	116297
2imgA	151	46.47		
2fh7A	595	60.05		
1zckA	154	60.77		
2nu8B	388	61.01		
1pwhA	327	64.39	c.79.1.1	95224
5nulA	138	64.89	c.23.5.1	31191
1zzwA	149	66.22		
1i2cA	404	66.26	c.2.1.2	83666
1y0yA	353	66.53	b.49.3.1,c.56.5.4	122514,122515
2j16A	182	67.10		
2d13A	227	68.12	c.26.2.1	131121
2e18A	257	68.93		
1sur	215	70.37		
1f8fA	371	72.87	b.35.1.2,c.2.1.1	83246,83247
2bo1A	101	74.20		
2q1sA	377	74.37		
1xfoA	357	75.19	b.49.3.1,c.56.5.4	115265,115266
1tzjA	338	75.67	c.79.1.1	112868
1qorA	327	77.35	b.35.1.2,c.2.1.1	24766,29782
1i0dA	332	78.80	c.1.9.3	61487
1igs	248	79.69		
1fpzA	212	79.99	c.45.1.1	59976
1dorA	311	80.15	c.1.4.1	28595
2cc0A	195	81.98	c.6.2.3	130209
1e5xA	486	83.33	c.79.1.1	59283
1oheA	348	84.78	c.45.1.1,c.45.1.1	87013,87014
1h3fA	432	87.10	c.26.1.1,d.66.1.4	76631,76632
2esbA	188	87.26		
2fshA	853	87.47		
1fc6A	388	88.79	b.36.1.3,c.14.1.2	64738,64739
2h1rA	299	89.64