# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	9.78e-13		
1rhsA	296	2.55e-12	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	3.05e-12	c.46.1.2,c.46.1.2	32717,32718
1rhs	296	3.32e-12		
1yt8A	539	2.56e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1gmxA	108	2.70e-11	c.46.1.3	65355
2fsxA	148	9.39e-11		
1uarA	285	1.07e-10	c.46.1.2,c.46.1.2	107762,107763
1qb0A	211	1.43e-10	c.46.1.1	32699
1c25	161	2.12e-10		
1ymkA	175	3.42e-10	c.46.1.1	123699
1t3kA	152	4.10e-10	c.46.1.1	106357
1whbA	157	4.27e-10	c.46.1.4	114639
2a2kA	175	5.09e-10		
1okgA	373	8.71e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	2.46e-09		
2j6pA	152	9.49e-09		
2gwfA	157	1.93e-08	c.46.1.4	135802
1wv9A	94	4.05e-08		
2oucA	142	8.27e-08		
1yn9A	169	6.197		
2f46A	156	8.052		
1yz4A	160	9.318		
2dbqA	334	11.69		
2c5sA	413	11.73	c.26.2.6,d.308.1.1	129950,129951
1x24A	180	15.44		
1zclA	180	16.31		
2p4gA	270	17.71		
1ywfA	296	18.80	c.45.1.5	124144
1eudB	396	22.63	c.23.4.1,d.142.1.4	31150,41571
1rxdA	159	23.11	c.45.1.1	111959
2c3zA	222	25.62		
2cybA	323	25.88		
1wrmA	165	26.24		
1ep3A	311	26.36	c.1.4.1	28597
2b4uA	335	26.50		
1vhrA	184	26.61	c.45.1.1	32651
1vhoA	346	29.23	b.49.3.1,c.56.5.4	100694,100695
1i9sA	210	30.86	c.45.1.1	62099
1yloA	348	31.40	b.49.3.1,c.56.5.4	123659,123660
2c46A	241	31.71		
1npyA	271	31.82	c.2.1.7,c.58.1.5	85995,85996
2i6jA	161	34.72		
2cftA	298	34.95		
2b4pA	334	37.27		
2p4dA	172	38.17		
1y56A	493	38.20		
2r0bA	154	39.20		
1d5rA	324	43.74	b.7.1.1,c.45.1.1	23181,32697
2hxpA	155	45.05		
1tf5A	844	51.61	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	106834,106835,106836,106837
2imgA	151	52.49		
1y0yA	353	52.92	b.49.3.1,c.56.5.4	122514,122515
2z0jA	237	53.53		
2fh7A	595	56.50		
1y0eA	223	57.93	c.1.2.5	116297
1zzwA	149	57.98		
1xfoA	357	58.83	b.49.3.1,c.56.5.4	115265,115266
2d13A	227	60.68	c.26.2.1	131121
1igs	248	61.04		
1zckA	154	63.94		
2bo1A	101	64.29		
1fc6A	388	65.74	b.36.1.3,c.14.1.2	64738,64739
1sur	215	66.12		
2e18A	257	69.29		
2nu8B	388	71.28		
1i2cA	404	72.34	c.2.1.2	83666
2pt7A	330	73.33		
5nulA	138	73.40	c.23.5.1	31191
2j16A	182	75.57		
1fpzA	212	77.31	c.45.1.1	59976
2a9fA	398	78.61		
1f8fA	371	79.47	b.35.1.2,c.2.1.1	83246,83247
2fshA	853	82.56		
1h3fA	432	83.87	c.26.1.1,d.66.1.4	76631,76632
1oheA	348	86.07	c.45.1.1,c.45.1.1	87013,87014
2h1rA	299	89.46