# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhsA	296	4.83e-15	c.46.1.2,c.46.1.2	32703,32704
2hhgA	139	5.91e-15		
1e0cA	271	1.24e-14	c.46.1.2,c.46.1.2	32717,32718
1rhs	296	1.79e-14		
1gmxA	108	9.39e-14	c.46.1.3	65355
1yt8A	539	3.16e-13	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1uarA	285	1.72e-12	c.46.1.2,c.46.1.2	107762,107763
1qb0A	211	2.49e-12	c.46.1.1	32699
2fsxA	148	2.79e-12		
1c25	161	3.89e-12		
1ymkA	175	6.92e-12	c.46.1.1	123699
1t3kA	152	7.92e-12	c.46.1.1	106357
1whbA	157	9.29e-12	c.46.1.4	114639
2a2kA	175	1.01e-11		
1okgA	373	1.02e-11	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2j6pA	152	1.39e-11		
2eg4A	230	4.20e-11		
2gwfA	157	2.10e-10	c.46.1.4	135802
1wv9A	94	7.94e-10		
2oucA	142	1.57e-09		
2c3zA	222	2.749		
1oywA	523	3.288	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2f46A	156	7.152		
1yn9A	169	9.125		
2cftA	298	15.95		
1zclA	180	18.80		
5nulA	138	21.02	c.23.5.1	31191
1vhrA	184	22.85	c.45.1.1	32651
1npyA	271	23.34	c.2.1.7,c.58.1.5	85995,85996
1yz4A	160	25.41		
1x24A	180	25.98		
2e18A	257	26.57		
2r0bA	154	28.21		
1tf5A	844	28.91	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	106834,106835,106836,106837
5nul	138	30.17		
2p4dA	172	32.20		
1vhoA	346	32.69	b.49.3.1,c.56.5.4	100694,100695
2c46A	241	34.10		
2oycA	306	34.22		
3brqA	296	35.50		
1i0dA	332	39.68	c.1.9.3	61487
1i9sA	210	43.31	c.45.1.1	62099
2b4gA	317	43.33	c.1.4.1	127829
2jg2A	422	47.54		
2df8A	325	48.48		
1wrmA	165	49.08		
2dbqA	334	49.16		
1oheA	348	49.65	c.45.1.1,c.45.1.1	87013,87014
2imgA	151	49.69		
1zzwA	149	50.92		
2q1sA	377	51.18		
2nt2A	145	52.60		
2b69A	343	53.77	c.2.1.2	127974
1ufyA	122	55.59	d.79.1.2	88489
2dekA	265	56.31	c.90.1.1	131430
2cybA	323	57.77		
2j16A	182	58.22		
2vc7A	314	59.97		
1d5rA	324	60.06	b.7.1.1,c.45.1.1	23181,32697
1igs	248	60.98		
1i2cA	404	63.21	c.2.1.2	83666
1ywfA	296	63.48	c.45.1.5	124144
2p4gA	270	63.68		
1vl2A	421	63.87	c.26.2.1,d.210.1.1	108708,108709
1lc0A	294	66.39	c.2.1.3,d.81.1.4	73823,73824
2h1rA	299	69.09		
2hcrA	326	69.50		
1gpjA	404	71.85	a.151.1.1,c.2.1.7,d.58.39.1	65451,65452,65453
1fpzA	212	72.05	c.45.1.1	59976
1l1eA	287	72.41	c.66.1.18	73454
3b5vA	248	72.74		
2fh7A	595	72.84		
2f4dA	184	73.58		
1k92A	455	73.62	c.26.2.1,d.210.1.1	68325,68326
3cwvA	369	76.28		
2b4uA	335	76.47		
2c1iA	431	77.31	c.6.2.3,d.341.1.1	129636,129637
1fsgA	233	81.73	c.61.1.1	34029
1r3sA	367	83.42	c.1.22.1	96963
2fshA	853	85.11		
2i6jA	161	85.44		
1i9gA	280	88.27	c.66.1.13	62090
2hrzA	342	88.36