# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 2.19e-14 1rhsA 296 2.93e-14 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 3.11e-14 c.46.1.2,c.46.1.2 32717,32718 1rhs 296 5.58e-14 1yt8A 539 4.19e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 1.23e-12 c.46.1.3 65355 1uarA 285 4.88e-12 c.46.1.2,c.46.1.2 107762,107763 2fsxA 148 5.69e-12 1okgA 373 6.05e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1qb0A 211 7.48e-12 c.46.1.1 32699 1c25 161 1.33e-11 1t3kA 152 2.21e-11 c.46.1.1 106357 1ymkA 175 3.46e-11 c.46.1.1 123699 2a2kA 175 3.70e-11 2eg4A 230 4.04e-11 1whbA 157 4.28e-11 c.46.1.4 114639 2j6pA 152 4.88e-10 2gwfA 157 1.44e-09 c.46.1.4 135802 1wv9A 94 4.41e-09 2oucA 142 1.15e-08 1yn9A 169 4.591 2c5sA 413 5.657 c.26.2.6,d.308.1.1 129950,129951 2f46A 156 5.853 1yz4A 160 6.819 2c3zA 222 6.957 1oywA 523 8.281 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x24A 180 13.17 1zclA 180 15.11 2i6jA 161 16.60 1vhrA 184 17.22 c.45.1.1 32651 1wrmA 165 17.52 1ywfA 296 18.46 c.45.1.5 124144 2hxpA 155 18.58 2p4gA 270 19.50 1eudB 396 19.76 c.23.4.1,d.142.1.4 31150,41571 2r0bA 154 21.14 1y0eA 223 23.06 c.1.2.5 116297 1igs 248 26.05 1tf5A 844 26.51 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2cftA 298 27.70 1rxdA 159 28.74 c.45.1.1 111959 1vl2A 421 29.73 c.26.2.1,d.210.1.1 108708,108709 2p4dA 172 30.09 2jg2A 422 30.28 1i9gA 280 30.59 c.66.1.13 62090 2c46A 241 31.24 2b4uA 335 33.29 1npyA 271 33.29 c.2.1.7,c.58.1.5 85995,85996 1yloA 348 34.73 b.49.3.1,c.56.5.4 123659,123660 3b5vA 248 34.85 1or8A 340 35.16 c.66.1.6 93451 2q1sA 377 36.21 2dekA 265 36.37 c.90.1.1 131430 1t5iA 172 36.64 c.37.1.19 106450 2cybA 323 38.23 2nu8B 388 40.95 1i9sA 210 41.73 c.45.1.1 62099 1ep3A 311 42.43 c.1.4.1 28597 2d13A 227 42.62 c.26.2.1 131121 1ct9A 553 43.36 c.26.2.1,d.153.1.1 31616,41834 1qorA 327 46.07 b.35.1.2,c.2.1.1 24766,29782 1ufyA 122 46.82 d.79.1.2 88489 2a9fA 398 48.69 1k92A 455 49.92 c.26.2.1,d.210.1.1 68325,68326 2f2sA 406 50.52 2b69A 343 51.20 c.2.1.2 127974 3cwvA 369 51.68 2e0tA 151 52.81 1sur 215 52.87 1zzwA 149 54.09 2pt7A 330 55.82 2f4dA 184 57.38 2e18A 257 57.55 1a53 247 58.48 1i2cA 404 58.58 c.2.1.2 83666 2imgA 151 58.62 2j16A 182 59.02 2b4pA 334 59.10 2nt2A 145 59.12 1jlnA 297 59.25 c.45.1.2 63172 5nulA 138 59.67 c.23.5.1 31191 1y56A 493 62.63 1oheA 348 63.28 c.45.1.1,c.45.1.1 87013,87014 2bo1A 101 65.32 1sqgA 429 66.62 a.79.1.3,c.66.1.38 105912,105913 2yxeA 215 67.25 2b4gA 317 69.81 c.1.4.1 127829 1d5rA 324 72.34 b.7.1.1,c.45.1.1 23181,32697 1p0kA 349 72.42 c.1.4.1 87648 1qo2A 241 73.71 c.1.2.1 28533 2c5aA 379 78.73 c.2.1.2 129894 1f8fA 371 84.23 b.35.1.2,c.2.1.1 83246,83247 1p15A 253 84.74 c.45.1.2 93894 2df8A 325 87.16 1z45A 699 87.26 b.30.5.4,c.2.1.2 124427,124428 1vhoA 346 87.88 b.49.3.1,c.56.5.4 100694,100695 1a4iA 301 88.45 c.2.1.7,c.58.1.2 30278,33926