# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 3.76e-16 1e0cA 271 4.14e-16 c.46.1.2,c.46.1.2 32717,32718 1rhs 296 5.10e-16 1rhsA 296 7.17e-16 c.46.1.2,c.46.1.2 32703,32704 1yt8A 539 7.51e-15 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 7.79e-15 c.46.1.3 65355 1uarA 285 4.27e-14 c.46.1.2,c.46.1.2 107762,107763 2fsxA 148 9.11e-14 1qb0A 211 1.64e-13 c.46.1.1 32699 1c25 161 2.00e-13 1okgA 373 2.39e-13 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1t3kA 152 3.51e-13 c.46.1.1 106357 1ymkA 175 4.09e-13 c.46.1.1 123699 2eg4A 230 9.86e-13 2a2kA 175 1.62e-12 1whbA 157 2.49e-12 c.46.1.4 114639 2j6pA 152 2.04e-11 2gwfA 157 1.07e-10 c.46.1.4 135802 1wv9A 94 3.52e-10 2oucA 142 5.07e-10 2c3zA 222 1.369 1pjr 724 1.890 1yz4A 160 3.402 2f46A 156 3.720 1yn9A 169 3.963 1ct9A 553 6.843 c.26.2.1,d.153.1.1 31616,41834 3b5vA 248 6.934 2p4dA 172 7.589 1pjrA 724 7.865 c.37.1.19,c.37.1.19 32391,32392 1vhrA 184 8.166 c.45.1.1 32651 2p4gA 270 9.412 1zejA 293 9.467 1ox0A 430 10.44 c.95.1.1,c.95.1.1 87495,87496 1ep3A 311 11.36 c.1.4.1 28597 2aouA 292 11.75 c.66.1.19 127100 1x24A 180 12.54 2r0bA 154 12.88 1e5xA 486 12.90 c.79.1.1 59283 1p15A 253 12.96 c.45.1.2 93894 1y56A 493 13.35 1ywfA 296 14.28 c.45.1.5 124144 2c46A 241 14.80 2i6jA 161 15.39 1vr0A 247 15.70 c.148.1.1 120428 1pc3A 350 15.91 c.94.1.1 104102 1a53 247 16.23 1oywA 523 17.21 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1jvbA 347 18.02 b.35.1.2,c.2.1.1 77181,77182 2hxpA 155 18.04 1qorA 327 18.85 b.35.1.2,c.2.1.1 24766,29782 1t5iA 172 18.86 c.37.1.19 106450 1rxdA 159 19.69 c.45.1.1 111959 2gupA 292 21.01 c.55.1.10,c.55.1.10 135744,135745 1wrmA 165 21.03 1igs 248 21.52 1u08A 386 21.56 c.67.1.1 107543 1d5rA 324 22.15 b.7.1.1,c.45.1.1 23181,32697 2hhjA 267 22.51 c.60.1.1 136497 2fh7A 595 23.10 2pt7A 330 23.49 1dorA 311 24.89 c.1.4.1 28595 1xkqA 280 26.39 c.2.1.2 115417 1psdA 409 27.71 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1i9gA 280 28.21 c.66.1.13 62090 1idk 359 28.78 2rjoA 332 28.86 2eihA 343 29.62 2qb7A 397 30.15 2b0mA 393 30.62 c.1.4.1 127644 2f2sA 406 30.86 1wlyA 333 31.55 1y0yA 353 31.67 b.49.3.1,c.56.5.4 122514,122515 1gc5A 467 32.36 c.72.1.3 60429 2bv9A 290 32.55 c.1.8.3 129242 2d13A 227 32.65 c.26.2.1 131121 1i9sA 210 33.99 c.45.1.1 62099 2e0tA 151 36.36 1i60A 278 36.96 c.1.15.4 71118 1fo3A 460 37.73 a.102.2.1 18845 2c5sA 413 38.22 c.26.2.6,d.308.1.1 129950,129951 1ufyA 122 38.32 d.79.1.2 88489 2d2jA 329 38.70 c.1.9.3 131175 1gpjA 404 38.99 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1aj2 282 40.10 1rroA 108 41.39 a.39.1.4 17195 2as0A 396 41.76 b.122.1.9,c.66.1.51 127227,127228 2v3aA 384 41.80 1rxwA 336 42.03 a.60.7.1,c.120.1.2 98059,98060 2b69A 343 42.23 c.2.1.2 127974 1a53A 247 42.27 c.1.2.4 28564 2hrzA 342 42.92 2f4dA 184 43.08 1l3iA 192 43.69 c.66.1.22 77676 1y0eA 223 43.79 c.1.2.5 116297 2v3gA 283 45.23 2j16A 182 46.01 1jnyA 435 46.22 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2nu8B 388 47.18 1bx4A 345 47.44 c.72.1.1 34935 1tf5A 844 47.56 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1zclA 180 48.13 1sc3A 178 50.28 c.17.1.1 105416 1bifA 469 50.68 c.37.1.7,c.60.1.4 31961,34003 1wdpA 495 51.70 c.1.8.1 120907 1npyA 271 52.50 c.2.1.7,c.58.1.5 85995,85996 1h5yA 253 53.60 c.1.2.1 65638 1pvdA 537 55.62 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2hmaA 376 56.60 2hpkA 208 56.63 2ipxA 233 57.03 1o54A 277 57.62 c.66.1.13 92482 1sur 215 57.74 1zzwA 149 57.83 1vi2A 300 58.92 c.2.1.7,c.58.1.5 100726,100727 2imgA 151 59.40 1x6vA 630 59.49 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 3ck6A 252 59.59 1vh7A 265 61.75 c.1.2.1 100646 1ozhA 566 61.77 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1idkA 359 61.98 b.80.1.2 28025 1u24A 337 62.26 c.45.1.4 112968 2nxcA 254 62.49 c.66.1.39 138739 1v7cA 351 63.82 c.79.1.1 100446 2fshA 853 64.53 1im8A 244 64.77 c.66.1.14 66212 1khbA 625 67.34 c.91.1.1,c.109.1.1 68606,68607 1p77A 272 68.48 c.2.1.7,c.58.1.5 94214,94215 1qi9A 556 69.21 a.111.1.2 19053 2bo1A 101 69.48 1kcmA 270 71.85 d.129.3.4 72300 2yxeA 215 72.41 2dbqA 334 72.52 1fc6A 388 72.67 b.36.1.3,c.14.1.2 64738,64739 1zckA 154 73.31 1yb5A 351 73.86 b.35.1.2,c.2.1.1 116601,116602 1pzgA 331 74.43 c.2.1.5,d.162.1.1 95425,95426 2dt9A 167 76.24 2nt2A 145 76.52 1mrgA 263 78.20 d.165.1.1 42183 2ohxA 374 78.73 b.35.1.2,c.2.1.1 24669,29685 2cfmA 561 78.82 1pg4A 652 79.31 e.23.1.1 88067 1ad1A 266 80.00 c.1.21.1 29668 5nulA 138 80.12 c.23.5.1 31191 1xfoA 357 80.33 b.49.3.1,c.56.5.4 115265,115266 3c24A 286 80.54 1v2dA 381 81.50 c.67.1.1 108281 4cpvA 108 81.93 a.39.1.4 17198 1kl7A 514 82.76 c.79.1.1 72678 2eh6A 375 83.22 2aznA 219 83.36 c.71.1.2 127608 2qneA 495 83.57 1tzjA 338 83.62 c.79.1.1 112868 1uumA 372 83.73 c.1.4.1 100010 1u6eA 335 84.09 c.95.1.2,c.95.1.2 119568,119569 2q3zA 687 85.86 2eo5A 419 86.14 1va0A 239 86.84 c.90.1.1 119899 2a0nA 265 87.10 c.1.2.1 125961 1jf9A 408 87.53 c.67.1.3 62931 2ib8A 395 87.83 1pwhA 327 89.18 c.79.1.1 95224