# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhsA 296 3.45e-14 c.46.1.2,c.46.1.2 32703,32704 2hhgA 139 3.83e-14 1e0cA 271 5.33e-14 c.46.1.2,c.46.1.2 32717,32718 1rhs 296 6.72e-14 1yt8A 539 6.66e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 1.74e-12 c.46.1.3 65355 2fsxA 148 7.07e-12 1uarA 285 7.45e-12 c.46.1.2,c.46.1.2 107762,107763 1okgA 373 9.10e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1qb0A 211 9.14e-12 c.46.1.1 32699 1c25 161 1.35e-11 1t3kA 152 3.20e-11 c.46.1.1 106357 1ymkA 175 3.41e-11 c.46.1.1 123699 2a2kA 175 4.00e-11 2eg4A 230 5.74e-11 1whbA 157 6.86e-11 c.46.1.4 114639 2j6pA 152 5.94e-10 2gwfA 157 1.64e-09 c.46.1.4 135802 1wv9A 94 5.68e-09 2oucA 142 9.70e-09 1yn9A 169 3.255 2c5sA 413 4.030 c.26.2.6,d.308.1.1 129950,129951 1yz4A 160 4.636 2f46A 156 4.860 2c3zA 222 5.076 1oywA 523 9.142 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x24A 180 10.44 2hxpA 155 13.44 1vhrA 184 13.53 c.45.1.1 32651 1ywfA 296 13.56 c.45.1.5 124144 1zclA 180 13.62 1wrmA 165 13.84 2i6jA 161 14.41 1igs 248 17.36 1tf5A 844 19.78 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2jg2A 422 20.19 2r0bA 154 20.42 1rxdA 159 22.04 c.45.1.1 111959 2p4dA 172 22.06 1y0eA 223 22.07 c.1.2.5 116297 1vl2A 421 23.64 c.26.2.1,d.210.1.1 108708,108709 2c46A 241 24.10 2b4uA 335 24.79 2p4gA 270 24.88 3b5vA 248 26.91 2b4pA 334 27.55 2a9fA 398 29.20 2q1sA 377 29.48 1ct9A 553 29.51 c.26.2.1,d.153.1.1 31616,41834 2cftA 298 30.91 1i9gA 280 31.31 c.66.1.13 62090 1i9sA 210 31.79 c.45.1.1 62099 1npyA 271 33.39 c.2.1.7,c.58.1.5 85995,85996 1or8A 340 33.89 c.66.1.6 93451 1eudB 396 34.24 c.23.4.1,d.142.1.4 31150,41571 1t5iA 172 34.51 c.37.1.19 106450 1yloA 348 36.81 b.49.3.1,c.56.5.4 123659,123660 2d13A 227 36.92 c.26.2.1 131121 2e0tA 151 37.14 1k92A 455 38.14 c.26.2.1,d.210.1.1 68325,68326 1zzwA 149 38.72 2e18A 257 39.35 1sur 215 39.62 2pt7A 330 41.12 1a53 247 41.43 2dekA 265 43.27 c.90.1.1 131430 2cybA 323 44.55 2nt2A 145 45.20 2b69A 343 45.68 c.2.1.2 127974 2f4dA 184 45.90 1d5rA 324 48.35 b.7.1.1,c.45.1.1 23181,32697 1qorA 327 52.46 b.35.1.2,c.2.1.1 24766,29782 2imgA 151 52.86 1ep3A 311 52.99 c.1.4.1 28597 1oheA 348 53.86 c.45.1.1,c.45.1.1 87013,87014 2b4gA 317 55.98 c.1.4.1 127829 1i2cA 404 56.12 c.2.1.2 83666 2yxeA 215 56.43 2nu8B 388 56.64 2pg3A 232 56.76 5nulA 138 57.14 c.23.5.1 31191 2j16A 182 58.54 1ufyA 122 59.01 d.79.1.2 88489 1i0dA 332 63.82 c.1.9.3 61487 2d2jA 329 66.38 c.1.9.3 131175 2hmaA 376 68.57 1vhoA 346 69.56 b.49.3.1,c.56.5.4 100694,100695 2c5aA 379 72.16 c.2.1.2 129894 1zckA 154 72.28 1sqgA 429 73.46 a.79.1.3,c.66.1.38 105912,105913 1f8fA 371 73.94 b.35.1.2,c.2.1.1 83246,83247 1jvbA 347 74.82 b.35.1.2,c.2.1.1 77181,77182 2esbA 188 75.70 2fh7A 595 77.95 1z45A 699 78.24 b.30.5.4,c.2.1.2 124427,124428 3cwvA 369 79.11 2hcmA 164 79.77 1fpzA 212 80.53 c.45.1.1 59976 1jlnA 297 80.60 c.45.1.2 63172 2z1mA 345 81.78 2hrzA 342 82.56 1dorA 311 83.42 c.1.4.1 28595 2eixA 243 84.21 2f2sA 406 85.34 1fc6A 388 86.76 b.36.1.3,c.14.1.2 64738,64739 1qo2A 241 87.02 c.1.2.1 28533 1p15A 253 87.80 c.45.1.2 93894 2pibA 216 88.78 2dbqA 334 89.45 1yb5A 351 89.56 b.35.1.2,c.2.1.1 116601,116602