# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	3.75e-15		
1rhsA	296	9.82e-15	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	1.11e-14	c.46.1.2,c.46.1.2	32717,32718
1rhs	296	2.38e-14		
1yt8A	539	2.31e-13	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1gmxA	108	2.38e-13	c.46.1.3	65355
1qb0A	211	5.44e-13	c.46.1.1	32699
1uarA	285	1.55e-12	c.46.1.2,c.46.1.2	107762,107763
1c25	161	1.64e-12		
1t3kA	152	2.20e-12	c.46.1.1	106357
2fsxA	148	2.29e-12		
1whbA	157	2.84e-12	c.46.1.4	114639
1ymkA	175	5.56e-12	c.46.1.1	123699
1okgA	373	6.02e-12	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2a2kA	175	6.51e-12		
2eg4A	230	3.36e-11		
2j6pA	152	1.63e-10		
2gwfA	157	3.01e-10	c.46.1.4	135802
1wv9A	94	8.34e-10		
2oucA	142	9.72e-10		
1yn9A	169	3.649		
2f46A	156	6.513		
1zclA	180	7.474		
1x24A	180	8.320		
1yz4A	160	9.417		
2c5sA	413	11.15	c.26.2.6,d.308.1.1	129950,129951
2c3zA	222	12.74		
1ywfA	296	12.79	c.45.1.5	124144
2dbqA	334	16.53		
1yloA	348	17.17	b.49.3.1,c.56.5.4	123659,123660
1vhoA	346	21.96	b.49.3.1,c.56.5.4	100694,100695
1i9sA	210	22.97	c.45.1.1	62099
1wrmA	165	23.14		
2c46A	241	24.41		
2b4uA	335	24.80		
2i6jA	161	25.33		
2imgA	151	27.68		
1rxdA	159	28.83	c.45.1.1	111959
2bo1A	101	30.25		
1xfoA	357	31.21	b.49.3.1,c.56.5.4	115265,115266
1y0yA	353	31.49	b.49.3.1,c.56.5.4	122514,122515
2p4dA	172	33.44		
2b4pA	334	36.06		
2r0bA	154	37.87		
2hxpA	155	38.02		
1eudB	396	38.80	c.23.4.1,d.142.1.4	31150,41571
1vhrA	184	41.05	c.45.1.1	32651
2fshA	853	43.44		
2pt7A	330	43.81		
2z0jA	237	56.20		
2cftA	298	57.57		
2cybA	323	57.70		
3ck6A	252	58.41		
1p15A	253	58.61	c.45.1.2	93894
2nt2A	145	58.72		
1d5rA	324	59.00	b.7.1.1,c.45.1.1	23181,32697
2j16A	182	60.37		
1fpzA	212	61.43	c.45.1.1	59976
1jlnA	297	61.44	c.45.1.2	63172
2nu8B	388	63.27		
1ep3A	311	65.57	c.1.4.1	28597
1sur	215	65.80		
1psdA	409	66.07	c.2.1.4,c.23.12.1,d.58.18.1	30097,31357,39354
1zzwA	149	66.73		
2fh7A	595	72.31		
1bif	469	73.65		
1zckA	154	75.08		
2p4gA	270	75.24		
2p0lA	288	75.62		
2e18A	257	76.61		
1tf5A	844	77.41	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	106834,106835,106836,106837
1y56A	493	80.10		
2hhjA	267	82.25	c.60.1.1	136497
1igs	248	83.73		
1sqgA	429	86.23	a.79.1.3,c.66.1.38	105912,105913
1oheA	348	86.67	c.45.1.1,c.45.1.1	87013,87014